Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47710 242 / 5e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G66360 137 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 134 / 2e-40 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT3G17980 132 / 2e-39 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 130 / 1e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G37740 129 / 2e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G05330 133 / 4e-38 AGD13 ARF-GAP domain 13 (.1) AT4G21160 130 / 4e-37 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT1G73580 125 / 4e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G07940 127 / 9e-36 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039113 [exp] 334 / 2e-119 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10033585 [exp] 136 / 3e-41 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038539 [exp] 139 / 2e-40 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10017629 [exp] 134 / 2e-40 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 132 / 3e-39 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10024165 [exp] 137 / 3e-38 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10016347 [exp] 137 / 4e-38 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10039538 [exp] 137 / 4e-38 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10009684 [exp] 130 / 4e-38 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004600 [exp] 261 / 2e-90 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 255 / 3e-88 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.017G125500 [exp] 134 / 1e-40 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 134 / 2e-40 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 133 / 3e-40 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G372000 [exp] 134 / 2e-38 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.008G131500 [exp] 128 / 3e-38 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.T125706 [exp] 134 / 1e-37 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.003G198301 [exp] 134 / 1e-37 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.010G110900 [exp] 125 / 6e-37 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10038745 pacid=23150706 polypeptide=Lus10038745 locus=Lus10038745.g ID=Lus10038745.BGIv1.0 annot-version=v1.0 ATGGGAGAACCGCACGGGTTGCTGAAAGTGACTGTGGTTCAGGGGAAGAGATTGGCTATCCGCGACTTCAAGACCAGCGATCCGTACGTAATTGTCAAGC TAGGCAATCAAATAGCAAGGACAAAGGTCATAAACAGTTGCCTTAATCCAGTCTGGAATGAAGAGCTACTTTTCTCCCTTACAGAACCCTTAATTGGAGT ATTAAACTTGGAAGTGTACGACAAAGACCGGTTCAAGGCGGACGACAAGATGGGAAGGGCCGAGCTGAACCTTCAGCCAATCGCCTCAGCTGCACGGCTG AAGCAGATCCTACACGTCTCCTCATCAGGTCAAACAGTGTTGAGGAAAGTCGTCCCGGACAGCGATAACTGCCTCATAAGGGAAAGCACCATTGCTTGTA TAGATGGTGAAGTGGTGCAAAGTGTGTGGTTGAAGCTCCATGAAGTCGAGTCTGGGGAGATAGAACTGAAGATCAAGCTGATCAATTCATCAGCAGCACA GTGA
AA sequence Show only first row Show all	>Lus10038745 pacid=23150706 polypeptide=Lus10038745 locus=Lus10038745.g ID=Lus10038745.BGIv1.0 annot-version=v1.0 MGEPHGLLKVTVVQGKRLAIRDFKTSDPYVIVKLGNQIARTKVINSCLNPVWNEELLFSLTEPLIGVLNLEVYDKDRFKADDKMGRAELNLQPIASAARL KQILHVSSSGQTVLRKVVPDSDNCLIRESTIACIDGEVVQSVWLKLHEVESGEIELKIKLINSSAAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47710			Calcium-dependent lipid-bindin...		Lus10038745 [exp]	0	1
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	16.2	0.6712
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	17.0	0.7101
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	22.4	0.6512
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	29.3	0.6502
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10001208 [exp]	30.1	0.6903
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10015594 [exp]	59.2	0.5893
AT5G47710			Calcium-dependent lipid-bindin...		Lus10039113 [exp]	67.1	0.6312
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	73.6	0.6409
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	88.4	0.5653
AT1G63610			unknown protein		Lus10016008 [exp]	92.6	0.6264

Compare expression of checked genes

Lus10038745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.