Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22260 339 / 5e-118 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039112 [exp] 352 / 6e-123 AT2G22260 270 / 1e-89 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004500 [exp] 361 / 9e-128 AT2G22260 345 / 4e-120 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10038746 pacid=23150249 polypeptide=Lus10038746 locus=Lus10038746.g ID=Lus10038746.BGIv1.0 annot-version=v1.0 ATGATACAACAATCGACCAAATCCCCTCATCCCCAAATCAGTGGCGACGACGAGGCAGCAACAACAACTGCCAAGAAGCAAACACTCGATCTAGGAAATG GAAGCGAAATCATCTACTTGCCTCGATTCTTACCGTTCGACGATTCCTGGAAGTTCTTCGATTATCTCGACACTCGGATCCCTTGGACCCGACCCACCGT ACGCGTCTTCGGTCGCTCCTGCCTCCAGCCTAGGGAGACATGTTACGTTGCAAGTCCCGGATTGCCAGAGCTTATATACAGTGGGTATAAGCCAAATGTC CATTGTTGGGATGACTATCCTCCTCTTAAGGACATCTTGGATGCTGTCCACAAAGCACTTCCGGGAAGCAAGTTCAACAGTTTGCTCCTGAACAGGTATA AAGGTGGGAATGACAATGTTGGTTGGCATGCTGATGACGAGAAGCTTTACGGGCCGACTCCAGAGATTGCCTCGGTTTCGTTTGGGTGCGAACGTGAGTT CTTGTTGAAGAAGAGACCCACTAAATCATCCAAAGAAGATGCGCCGGTTAAGAAGCGGTTAAAGAAGAGCGAAACCCCTGGTGATCATCATTCGTTCAGG TTGAAGCATGGATCGTTGCTCGTGATGAGAGGCTACACTCAAAGAGACTGGCTTCACTCAGTGCCGAAGCGTGCAAAAGTTGAAGCGACCCGAATCAACC TCACCTTCAGGCTAGTCCTCTGA
AA sequence Show only first row Show all	>Lus10038746 pacid=23150249 polypeptide=Lus10038746 locus=Lus10038746.g ID=Lus10038746.BGIv1.0 annot-version=v1.0 MIQQSTKSPHPQISGDDEAATTTAKKQTLDLGNGSEIIYLPRFLPFDDSWKFFDYLDTRIPWTRPTVRVFGRSCLQPRETCYVASPGLPELIYSGYKPNV HCWDDYPPLKDILDAVHKALPGSKFNSLLLNRYKGGNDNVGWHADDEKLYGPTPEIASVSFGCEREFLLKKRPTKSSKEDAPVKKRLKKSETPGDHHSFR LKHGSLLVMRGYTQRDWLHSVPKRAKVEATRINLTFRLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10038746 [exp]	0	1
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	9.8	0.7117
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10030041 [exp]	11.7	0.6270
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	12.1	0.7236
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	13.5	0.6901
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	15.2	0.7069
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	17.8	0.7133
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	19.1	0.6909
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	38.0	0.6662
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10014338 [exp]	39.0	0.6905
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	43.8	0.6191

Compare expression of checked genes

Lus10038746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.