Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51310 640 / 0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039111 [exp] 865 / 0 AT1G51310 667 / 0.0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259000 [exp] 696 / 0 AT1G51310 683 / 0.0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF03054 [flax] [poplar] tRNA_Me_trans tRNA methyl transferase
Representative CDS sequence Show only first row Show all	>Lus10038747 pacid=23150580 polypeptide=Lus10038747 locus=Lus10038747.g ID=Lus10038747.BGIv1.0 annot-version=v1.0 ATGACGATGAAGCTATCAGCTTTCCGGCCGATATTCTCCGCCGGCACTAAGCTTCTTCCATCTCTTCTCTCCCCACCAAAACCATGTTCTCTCCGATTAA CTCCTCCCCTGATTTTCCTCAATCATTCCTCTTCTTCCTCCCGGTCACGCCGCTTCAGCAGCTCCTTAGTTTCGCAAGTTTCTCAACCGACGACGCCGGT GATTGATCCGTACTATTTATCTTGCTGTATGCCTGAAAAGGATAAACTCAGAATTGCTGTTTTGATCAGTGGAGGAGTGGATAGCAGCGTTGCTCTTCGA CTTCTCCATGCTGCTGGTCATCAATGTACTGCATTCTACCTCAAAATCTGGTTCCAGGAAGACTATGAGAACTTTTGGTCAGAGTGTCCTTGGGATGAGG ATTTGAAGTATGCAACAGCTGTTTGTGATCAGGTTGATGTGCCACTAGAAGTTGTGCATTTGACTGATGAATATTGGAACAATGTGGTATCTTACATTAT CAAGGAGTACCAATGTGGCCGGACTCCGAATCCAGATGTTCTATGCAACACACGGATCAAATTCGGTGCTTTCCTGGATGCCGTAAATGGGATGAGATTC GATTATATCGCTTCGGGGCACTATGCCAGAGTCGTTCACCCTTCTTCAGGTCATGTCGACCAGTCTTCTGTTTTGCAGCTCTCTAAAGACATGGTGAAGG ATCAAACTTATTTCCTGTCACATTTATCACAAGCGCAACTGAAGCGCGTTATATTCCCACTAGGCTGCATTCCGAAGGACGAAGTTCGCAAACTTGCTAC AACATTCGACCTCCCTAACAAGGATAGAAAGGATTCACAAGGAATCTGCTTCTTAGGAAAAATCAAATTCAGTGAATTTGTTGCAAGACAGATTGGAGAG AGGGAAGGGACCATACTCGAAGCCGAGACGGGTGATTTCCTCGGTATGCATAGGGGATTCTGGTTCTACACAATCGGTCAACGACAGGGTCTTCGTCTTC CCGGTGGGCCATGGTATGTTGTGGACAAGGATGTGAACAACAATGTAGTGTTTGTGTCACGAAACTACTTTTCCATCGACAAGAAAAGGCGATCTTTTCG CGTTGGCTCGCTGAAATGGCTCGCTGGGAGACCTCCTGAGCTAACACTGCAGCTCCAGTGCAAGGTCCGGCATGGACCGAGGTTCTACGACTGTAATGTG ACGATCGATGATGAGGAAATTGCGACGGTCCACTTGTCGGAGGACGATCAAGGGCTAGCTGCGGGGCAATTTGCAGCCTTCTACAAGGAGAGAAGGTGTG TAGGGTCTGGTGTGATATTGGAATCTTGGGATGATCAAGGGTTCCCGATGTGTGAAAGGGCTTTGAAATTGGCGAAAGTAGAAGACATATCTAAGCTTGG AAAACCAGTTAAGATCATGGTGAAGCCAGAGACTCCAGTAGATGCAGGATTACAACATATACACTTGGGAGCTAATTAA
AA sequence Show only first row Show all	>Lus10038747 pacid=23150580 polypeptide=Lus10038747 locus=Lus10038747.g ID=Lus10038747.BGIv1.0 annot-version=v1.0 MTMKLSAFRPIFSAGTKLLPSLLSPPKPCSLRLTPPLIFLNHSSSSSRSRRFSSSLVSQVSQPTTPVIDPYYLSCCMPEKDKLRIAVLISGGVDSSVALR LLHAAGHQCTAFYLKIWFQEDYENFWSECPWDEDLKYATAVCDQVDVPLEVVHLTDEYWNNVVSYIIKEYQCGRTPNPDVLCNTRIKFGAFLDAVNGMRF DYIASGHYARVVHPSSGHVDQSSVLQLSKDMVKDQTYFLSHLSQAQLKRVIFPLGCIPKDEVRKLATTFDLPNKDRKDSQGICFLGKIKFSEFVARQIGE REGTILEAETGDFLGMHRGFWFYTIGQRQGLRLPGGPWYVVDKDVNNNVVFVSRNYFSIDKKRRSFRVGSLKWLAGRPPELTLQLQCKVRHGPRFYDCNV TIDDEEIATVHLSEDDQGLAAGQFAAFYKERRCVGSGVILESWDDQGFPMCERALKLAKVEDISKLGKPVKIMVKPETPVDAGLQHIHLGAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51310			transferases;tRNA (5-methylami...		Lus10038747 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	2.4	0.8605
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	4.9	0.8413
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10025895 [exp]	6.5	0.7932
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	11.3	0.8345
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	13.6	0.8339
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	14.7	0.8228
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	15.7	0.8073
AT2G38025			Cysteine proteinases superfami...		Lus10035535 [exp]	15.7	0.7670
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	17.3	0.7790
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	19.3	0.8123

Compare expression of checked genes

Lus10038747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.