Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50920 886 / 0 Nucleolar GTP-binding protein (.1) AT1G10300 805 / 0 Nucleolar GTP-binding protein (.1) AT1G80770 128 / 3e-32 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23860 67 / 4e-12 GTP-binding protein-related (.1) AT4G39520 53 / 3e-07 GTP-binding protein-related (.1) AT1G72660 51 / 1e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G17470 51 / 2e-06 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT5G66470 45 / 0.0001 RNA binding;GTP binding (.1) AT1G07615 45 / 0.0001 GTP-binding protein Obg/CgtA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002558 [exp] 991 / 0 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 986 / 0 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10039110 [exp] 565 / 0 AT1G50920 489 / 1e-170 Nucleolar GTP-binding protein (.1) Lus10007959 [exp] 506 / 1e-177 AT1G50920 498 / 2e-174 Nucleolar GTP-binding protein (.1) Lus10007958 [exp] 327 / 1e-106 AT1G50920 322 / 7e-105 Nucleolar GTP-binding protein (.1) Lus10019508 [exp] 119 / 9e-28 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 118 / 3e-27 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10005800 [exp] 53 / 6e-07 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 52 / 7e-07 AT4G39520 655 / 0.0 GTP-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258900 [exp] 900 / 0 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.009G054000 [exp] 900 / 0 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.002G134900 [exp] 121 / 3e-29 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G080900 [exp] 54 / 2e-07 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G170300 [exp] 50 / 3e-06 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 50 / 4e-06 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G239600 [exp] 47 / 4e-05 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.007G021900 [exp] 42 / 0.0008 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08155 [flax] [poplar] NOGCT NOGCT (NUC087) domain CL0023 [flax] [poplar] P-loop_NTPase PF06858 [flax] [poplar] NOG1 Nucleolar GTP-binding protein 1 (NOG1)
Representative CDS sequence Show only first row Show all	>Lus10038748 pacid=23150548 polypeptide=Lus10038748 locus=Lus10038748.g ID=Lus10038748.BGIv1.0 annot-version=v1.0 ATGGTTCTGTATAATTTCAAGAACATAGCGCCGGTTCCGAATGGGAAGGATTTTATCGACATCGTTCTGTCAAAAACACAAAGGCAGACGCCTACAGTAA TCCACAAGGGATCGCGTACCGTCGAGATCCGCAAGTTCTACATGCGCAAGGTGAAGTTCACCCAGTCGACGTACACCGACAAGCTCTCGAAAATCATCGA CGACTTCCCTCGTCTGGACGACATTCATCCTTTCTATTGCGACTTCCTCCACATTCTCTTCGACAAAGATCATTTCAAAGTTGCTCTCGGCCAGGTAAAC ACGGCCAGGAATAACATCAGCAAGATTGCTAAGGAATATGTAAAGATGTTGAAGTATGGCGACTCTCCATACAGGTGCAAATGCTTGAAGGTTTCTGCAC TCGGCAGAATGTGTACTGCTATCAAGAGGATCGGACCTAGTTTGGCTTATCTTGAAGATGTCAGGCAGCACATGGCTAGGCTTCCTTCGATCGATCCGAA TACTCGGACCATCTTGATTTGCGGGCTTCCGAATGTTGGGAAGAGCTCCTTCATGAACAAGATCACTGGGGCTGACGTGGATGTCCAGTCATATGCTTTC ACTACCAAGTCGCTGTTTGTTGGCCACACGGATTACAAGTACTTGAGGTATCAGGTGATTGATACTCCCGGAATCTTAAACAGGCCGTTGGAAGATAGGA ATGGAATCGAGATGTGTACGATTACAGCTCTAGCTCATTTGAGAGCTGCTGTTTTGTTCTTCCTGGACCTCTCGGGATCGTGTGGCTACACCATTGCTCA GCAGTCGGCTTTGTTTCATAGCATCAAAGCATTGTTCATGAACAAGCCTTTGACCATTGTTTGCAACAAGGCTGACTTGCAGACTTTGGAAGGGTTGAGT GAGGAAGATAGGAAGCTGGTGATGGATATGAAAGCTGAAGCATTCAAGACTAATCTTGTCGGTCAAGATGATGATTCGGGTTTGCTTATGATGATGAGCA CTCTGACTGAGGAAGGGGTGATGGATGTGAAGAACTCTGCTTGTGAGAGGCTGCTGGATCAGAGAGTGGAAATGAAGATGAAATCGAAGAAGATGAACGA TTGTTTGAATCGGTTCCATGTTGCTATGCCGAAGCCACGCGACCAAATCGAAAGGCCGGTTTGTATTCCGCAACCGGTTTTGGAGAAGATGGAGAAGAGG AAAACCGAAAAGGATTTGGAAGAGGAGAACGGCGGTGCTGGTGTGTATTCAGCCAGTTTGACGAAGCATCACATTTTGAAAGACGAAGAATGGAAGGTAG ATATACTCCCCGAGATTCTCGATGGACACAATGTGTATGATTTCCTGGACCCCGATATCTTGATCAGGCTCGAGGAGCTGGAAAATGAAGAAACTGAAGA AGAAAAAGATGAGGAGTTTGAGATCGATGGGGAGGAGTTTTCACCGGAACAGAAGCAACTTCTGTCACAAATCAGGCGAGCGCAGAACTTGTGTAGGCTG GAGCACAGGATAAAGAAGAGCAATGCTCAAAACAGGCCGATTGTGCCTCGAAAGTTCGACAAGGATAGGAAGTTCACGTCTCAGAGATTTGGCAGGCAGA TGTCGAGTGTGGGGATCGATCCTTCCCGAGCTATAGAGCGCTCTCGTAGCAGAGGTCGCAAAAGAGGAAGGTCTGTTGAGGATGATGCTATGGACATTGA TGGTTCGAACAAGAAGCTGCGGGTGAGATCGAGATCGAGCTATAGGATGACGCGACCTATAACTGATGTTGTACCGGGGGATGGGTACAAGGACTCTGCT CAGAAGAGGAAGGCGATTCAGATTGCAAGGAAGGCTGTTTACAAGAGGAACAAGAATGCTCGTTGTGGTGAGGCGGATAGAGTGATTCCTACTCTCAGGC CTAAGCATCTGTTCTCTGGAAAACGTGGGAGGGGGAAAACTGATAGACGTTAA
AA sequence Show only first row Show all	>Lus10038748 pacid=23150548 polypeptide=Lus10038748 locus=Lus10038748.g ID=Lus10038748.BGIv1.0 annot-version=v1.0 MVLYNFKNIAPVPNGKDFIDIVLSKTQRQTPTVIHKGSRTVEIRKFYMRKVKFTQSTYTDKLSKIIDDFPRLDDIHPFYCDFLHILFDKDHFKVALGQVN TARNNISKIAKEYVKMLKYGDSPYRCKCLKVSALGRMCTAIKRIGPSLAYLEDVRQHMARLPSIDPNTRTILICGLPNVGKSSFMNKITGADVDVQSYAF TTKSLFVGHTDYKYLRYQVIDTPGILNRPLEDRNGIEMCTITALAHLRAAVLFFLDLSGSCGYTIAQQSALFHSIKALFMNKPLTIVCNKADLQTLEGLS EEDRKLVMDMKAEAFKTNLVGQDDDSGLLMMMSTLTEEGVMDVKNSACERLLDQRVEMKMKSKKMNDCLNRFHVAMPKPRDQIERPVCIPQPVLEKMEKR KTEKDLEEENGGAGVYSASLTKHHILKDEEWKVDILPEILDGHNVYDFLDPDILIRLEELENEETEEEKDEEFEIDGEEFSPEQKQLLSQIRRAQNLCRL EHRIKKSNAQNRPIVPRKFDKDRKFTSQRFGRQMSSVGIDPSRAIERSRSRGRKRGRSVEDDAMDIDGSNKKLRVRSRSSYRMTRPITDVVPGDGYKDSA QKRKAIQIARKAVYKRNKNARCGEADRVIPTLRPKHLFSGKRGRGKTDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10039110 [exp]	1.0	0.8948
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10017670 [exp]	1.4	0.8289
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	3.9	0.8192
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	4.6	0.7590
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10018540 [exp]	8.5	0.7707
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Lus10034516 [exp]	14.7	0.7456
AT5G47400			unknown protein		Lus10004740 [exp]	15.2	0.7730
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	17.2	0.7377
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10007983 [exp]	27.9	0.7273
AT5G47400			unknown protein		Lus10007801 [exp]	32.6	0.7727

Compare expression of checked genes

Lus10038748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.