Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47720 637 / 0 Thiolase family protein (.1.2.3.4.5) AT5G48230 619 / 0 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) AT1G04710 194 / 2e-57 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1) AT2G33150 192 / 4e-56 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) AT5G48880 187 / 1e-54 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039109 [exp] 738 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10012317 [exp] 639 / 0 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10006362 [exp] 604 / 0 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10023672 [exp] 197 / 3e-58 AT2G33150 818 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011879 [exp] 189 / 7e-55 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10022812 [exp] 182 / 3e-52 AT2G33150 702 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011748 [exp] 176 / 9e-50 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004400 [exp] 670 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.014G168700 [exp] 629 / 0 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) Potri.001G051900 [exp] 189 / 4e-55 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051800 [exp] 183 / 6e-53 AT2G33150 673 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.002G216400 [exp] 182 / 2e-52 AT2G33150 660 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02803 [flax] [poplar] Thiolase_C Thiolase, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00108 [flax] [poplar] Thiolase_N Thiolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038749 pacid=23150316 polypeptide=Lus10038749 locus=Lus10038749.g ID=Lus10038749.BGIv1.0 annot-version=v1.0 ATGGATTCTTCTTCAGATTTTATCAAACCTAGAGATGTTTGCATCGTTGGTGTCGCTCGTACCCCCATGGGTGGCTTTCTCGGCACACTTTCTTCTTTAT CCGCCACGCAGCTTGGTTCCATAGCCATTCAAGGTGCTCTTCAGATGGCGAAAGTCGATCCTTCCAATGTGCAAGAGGTCTACTTTGGCAATGTCCTGAG TGCAAATTTAGGACAGGCTCCTGCTAGACAGGCTGCTTTAGGTGCAGGGATACCTAATTCAGTGGTATGCACCACTATCAACAAAGTTTGCTCATCAGGA ATGAAAGCAACAATGATTGCTGCCCAGACAATTCAGTCAGGTACTCAAGATATTGTTGTTGCTGGCGGTATGGAGAGCATGTCTAATGCACCCAAGTACC TGGTGGGAGCAAGGGTTCGTTGTCTTTTCGGTAATCGAACTGTCTTTTTAAACAGAAAGGGCTCTCGCCTAGGACATGAAACTGTTGTTGATGGCATGCT CAAAGATGGCCTGTGGGATGTGTATAATGACTTTGGGATGGGTGTTTGTGCAGAAATATGTGCCGAGCAGCATCATATAACAAGAGAAGAGCAGGATTCT TATGCTATTCAGAGCTTTGAGCGAGGCAGTGCAGCACAAAATAGTGGCCTCTTTTCTTGGGAAATAGTACCGGTTGAAATTTCAACAGGAAGAGGGAAAC CATCAACTGTAATTAGTAAAGATGAAGGCTTGGGAAAGTTTGATGCGGTAAAACTTAAGAAGCTGAGACCAAGTTTCAAGGATACAGGTGGTACCGTAAC TGCTGGGAACGCCTCTATAATAAGTGATGGTGCAGCAGCACTAGTGCTGGTGAGCGGAGAAAAAGCACGAGAGCTCGGCTTACAAGTGATTGCCAAGATA AAGGGGTTTGCTGATGCCGCTCAGGCCCCTGAGCTTTTCCCTACTGCGCCGTCTCTTGCAATTCCGAAAGCTATTTCAAATGCAGGCCTGAAAGCGTGTC AGATCAATTACTACGAGATAAACGAAGCGTTTTCTGTTGTTGCACTTGCCAACCATAAACTCCTTGGGCTCGATCCCGAGAAGGTGAACGCTCATGGTGG AGCAGTATCACTCGGACATCCTCTGGGATGCAGCGGAGCTCGTCTACTCGTGACATTGTTAGGGGTGCTGAGACATAAGAATGGGAAATATGGGGTAGCT GGGATCTGCAATGGAGGAGGAGGAGCATCTTCCCTTGTTCTTGAGCTAATGCCGTCTTCAGCAGCTAGACGTCCATCGTTGTAA
AA sequence Show only first row Show all	>Lus10038749 pacid=23150316 polypeptide=Lus10038749 locus=Lus10038749.g ID=Lus10038749.BGIv1.0 annot-version=v1.0 MDSSSDFIKPRDVCIVGVARTPMGGFLGTLSSLSATQLGSIAIQGALQMAKVDPSNVQEVYFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSG MKATMIAAQTIQSGTQDIVVAGGMESMSNAPKYLVGARVRCLFGNRTVFLNRKGSRLGHETVVDGMLKDGLWDVYNDFGMGVCAEICAEQHHITREEQDS YAIQSFERGSAAQNSGLFSWEIVPVEISTGRGKPSTVISKDEGLGKFDAVKLKKLRPSFKDTGGTVTAGNASIISDGAAALVLVSGEKARELGLQVIAKI KGFADAAQAPELFPTAPSLAIPKAISNAGLKACQINYYEINEAFSVVALANHKLLGLDPEKVNAHGGAVSLGHPLGCSGARLLVTLLGVLRHKNGKYGVA GICNGGGGASSLVLELMPSSAARRPSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	0	1
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	1.4	0.9596
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	3.5	0.9533
AT5G41810			unknown protein		Lus10001907 [exp]	3.7	0.9540
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	4.9	0.9521
AT5G65495			unknown protein		Lus10002656 [exp]	5.9	0.9467
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	5.9	0.9464
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	7.3	0.9449
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	8.4	0.9443
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	8.5	0.9465
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	9.9	0.9441

Compare expression of checked genes

Lus10038749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.