Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62030 574 / 0 diphthamide synthesis DPH2 family protein (.1) AT3G59630 108 / 2e-25 diphthamide synthesis DPH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039108 [exp] 791 / 0 AT5G62030 636 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10009552 [exp] 97 / 1e-21 AT3G59630 572 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10020375 [exp] 95 / 7e-21 AT3G59630 560 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041300 [exp] 612 / 0 AT5G62030 623 / 0.0 diphthamide synthesis DPH2 family protein (.1) Potri.006G123700 [exp] 100 / 5e-23 AT3G59630 578 / 0.0 diphthamide synthesis DPH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01866 [flax] [poplar] Diphthamide_syn Putative diphthamide synthesis protein
Representative CDS sequence Show only first row Show all	>Lus10038750 pacid=23150252 polypeptide=Lus10038750 locus=Lus10038750.g ID=Lus10038750.BGIv1.0 annot-version=v1.0 ATGGAGGTGCAGGCGATCCCTCCTCCCAACAGCGGCGGCGCAAGGCCGAAACCAACTCCGAAACGCTTCGTGAAGAACCAGATACCGGAGTCAATCCTCA ACGACGCCTCTCTCAACGCCGCCATATCTCTGCTTCCGGCCAACTACAACCTTGAGATTCACAAGTGCGTGTGGCGGCTCCGCTCGATCAAGTGCCGCCG CCTCGCTCTCCAGCTCCCGGAAGGTCTCCTAATGTACTCCCTCATCCTCGCCGACATCTTCACCGCCTTCTCCGACGTCGACCACTGCTTCGTCCTCGGC GACGTCACCTACGGCGCTTGCTGCGTTGACGACTTCTCCGCCGTCTCGCTCGGCGCCGATCTCCTCATCCACTATGGCCACAGCTGCCTGGTTCCCATCG ACAACACCAAAATCCCCTGCCTTTACGTCTTCGTCGAGATCAAAATCGACGTCAATCGCTTGATCGACACCGTAAAGCTCAATTTCACCGACAAGAGCAT CGTCCTAGCCGGCACGATCCAGTTCGGGGGAGCTATTCGAGAAACGAAGCCTGAATTGGAGAAGTATGGGCTCCAGGTTCTGATCCCTCAGTCTAAACCA TTATCCTCCGGTGAAGTCCTCGGCTGCACTGCGCCAAGAGTCTCTGCAACTGCTTTGGGAGTAAGTAACTTGAGTGACACTGTTGTGGTGTTTGTAGCTG ATGGTAGGTTTCATTTGGAAGCTTTCATGATTGCCAATCCTGGAATCAAGGCATTCAGGTACGATCCGTATGTAGGCAAGCTGTTTCTTGAAGAATACGA TCATGTAGGAATGAAGGAGACGAGGAAGAAAGCAGTAGAGAAAGCGAAAACTGCTAAAAGATGGGGGCTCGTTCTTGGAACTTTGGGGAGGCAAGGGAAT CCAAGGATTCTTGATAGATTGGAGAAGAAAATGAGAGATAGAGGGTATACTTATATGGTTGTTCTGATGTCTGAAATCAGCCCGACGAGGATCCAGTTGT TTGAAGATTGTGTGGATGCTTGGATTCAGATAGCATGTCCTAGGCTCTCGATTGACTGGGGGGATGCTTTCCTGAAACCGATATTGACGCCTTTCGAAGC AGAGATTGCGCTTGGGGATGTAAAAGGCTGGTGGGAGAAGAAGAGTTTGGTGGCGAATGCAGGGTGTTGCGACCGCAAGTTAGGATGTGGATAG
AA sequence Show only first row Show all	>Lus10038750 pacid=23150252 polypeptide=Lus10038750 locus=Lus10038750.g ID=Lus10038750.BGIv1.0 annot-version=v1.0 MEVQAIPPPNSGGARPKPTPKRFVKNQIPESILNDASLNAAISLLPANYNLEIHKCVWRLRSIKCRRLALQLPEGLLMYSLILADIFTAFSDVDHCFVLG DVTYGACCVDDFSAVSLGADLLIHYGHSCLVPIDNTKIPCLYVFVEIKIDVNRLIDTVKLNFTDKSIVLAGTIQFGGAIRETKPELEKYGLQVLIPQSKP LSSGEVLGCTAPRVSATALGVSNLSDTVVVFVADGRFHLEAFMIANPGIKAFRYDPYVGKLFLEEYDHVGMKETRKKAVEKAKTAKRWGLVLGTLGRQGN PRILDRLEKKMRDRGYTYMVVLMSEISPTRIQLFEDCVDAWIQIACPRLSIDWGDAFLKPILTPFEAEIALGDVKGWWEKKSLVANAGCCDRKLGCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10038750 [exp]	0	1
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	5.2	0.9068
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	6.0	0.8989
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	13.0	0.9038
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	14.2	0.9025
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	16.8	0.8976
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	17.0	0.8866
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	17.9	0.8985
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	20.2	0.8851
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	22.0	0.8885
AT4G26810			SWIB/MDM2 domain superfamily p...		Lus10038799 [exp]	23.6	0.8446

Compare expression of checked genes

Lus10038750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.