Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12150 265 / 1e-81 Plant protein of unknown function (DUF827) (.1) AT5G55860 169 / 4e-45 Plant protein of unknown function (DUF827) (.1) AT4G17210 126 / 8e-31 Plant protein of unknown function (DUF827) (.1) AT2G26570 63 / 5e-10 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT4G33390 59 / 8e-09 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039107 [exp] 841 / 0 AT1G12150 360 / 5e-118 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 220 / 2e-63 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 217 / 2e-62 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 64 / 3e-10 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 60 / 5e-09 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10017614 [exp] 42 / 0.001 AT1G66840 268 / 3e-81 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004100 [exp] 354 / 4e-116 AT1G12150 293 / 2e-92 Plant protein of unknown function (DUF827) (.1) Potri.016G005200 [exp] 352 / 4e-115 AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 227 / 3e-66 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.017G118900 [exp] 50 / 4e-06 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 49 / 1e-05 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 49 / 1e-05 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10038751 pacid=23150646 polypeptide=Lus10038751 locus=Lus10038751.g ID=Lus10038751.BGIv1.0 annot-version=v1.0 ATGGTGAATATACGGACGATTAAGGTTGAAGGGAAAACTGGAGGAGGGGGAGGAGCAGGAGAGATTGGGGAGATTGACACTAGGGCTCCTTTCCAATCGG TGAAGGCTGCTGTTAGTTTGTTTGGAGAGGTTGCCATTTCCAAAAGCAGACCTTCTTTCAAGAAGACCAACTCTAGGCTTAATGCTTCAGAGAATGTGTT GGAAAAGGAGACACAGCTGATGCTGAGCCGCAGGGAGTACGAGAAGTACAGGCACAAGCTCGAGAGTTCCGAGACAGCCAAAGCTCGTACCAATGCCGAG CTCGAGAGGGCCAAGAGGACCCTCGAGGACCTCAACACCAAGCTCAATTCCGTGATTAGGTCCAAGATGTCGGCCCTCGGAGCTGCTGAAGCTGTCAAGC AGCGAGCCAGGAAGCTTGAGGTCGCCAAGTCCCACAAGGACATGGGACAGTCCGAAAGGAGGATCGAGCTGCAAGAAGCCCGGGACAGGTACGCAGCCAC CTCCGAGGAGCTCAACTCGGCCAAGCAACAGCTCAACAAGATCAGGCAAGATTTCGACGCCACTATGGAGGCCAAATGGGCCGCATTCCAGCTCGCTGCT GAAGCTCAGCGATCGGCCAACATGAACTCCGAGAGAGCAGGCGAGCTCGCGAAGGAGATTCACGCAATGCGCGAATCAGGGCACCATTTGAAAGCTGTGT CCGTGGAAGCTCACGAACGCCAAGTTAAAGGCTTGGCGGATAAAACTCGTTATGTCGAAGCTTACAAAGCTGCTAAACAAGAAGTTGACGTGCATGTTGA GCAGTTGAGGAAAGAGTATGATCCGGAACTCGTCAGGGTTCTCGAAGAGAGGCTTGCAGAGATAACATCCGAAATTGAAGACTTGCAAGCGCAGATGAAA AGAGCGCACGCTGATGAAATGGATTCCGTGAAGGGGATAACGAGTGAATTGAACCAAGCAACGAGGAAGCTCCAGGAGATTGCGGAGGAAGAGAGCTCGC TTCGTGTGAAAGTGAACAATATGAGGGTTGAGATGGAGAATCTGAAGCTGGAGAAGGAAAAATTGTTGGAGAAAGAAGCGCAAAGTTCGGAACTTGTTCA AGAAGAGGAAAGTTCAGGAGCAGCATTCAAGAAGCTGATTTCCCAAACGGAAGCTGTAATTAAGGAGGCAGAAGATCTACAGAGGATCGCAAAGGAGGCA AATCAGGAGGCCGAGAATGCTAGACTGAGGACTCAACAAGCTGAGGAGAAGCTACTGCTTTCTGCTGCGGAAACTGAAGTGGCGAAAGCAGCAGCACTGA GAGCCCATACAGAAATGAGAAAGCTGTCCGAAACGAAAGGCGACGATGTTCTTAGCGAGGAGCCTGGAAAGAGGATGAGGATTACATTGTTGGAATACGT TGCCCTGCAAAAGAAACTGTCTGAAAGTGCTGGAATAGCAGAAAGAACTGTGGCAGAGACCATGAATCAGTTGGAATTGGTTAAGACGAAAACAAACGAA GAATTGAAGAAGTTGGAGGCTAACCTGAAAGCTATCGAGGAGATTAAGGAAGCCACCGAGCTAGCTTTGCAGGGAGCGGATGCTGCGGAGACTGCACAAC GCGCTCTGGAAGCCGAACTGAAGAAGTTGCGAGATCAAGAAGGTTCTACGGGTGCATAA
AA sequence Show only first row Show all	>Lus10038751 pacid=23150646 polypeptide=Lus10038751 locus=Lus10038751.g ID=Lus10038751.BGIv1.0 annot-version=v1.0 MVNIRTIKVEGKTGGGGGAGEIGEIDTRAPFQSVKAAVSLFGEVAISKSRPSFKKTNSRLNASENVLEKETQLMLSRREYEKYRHKLESSETAKARTNAE LERAKRTLEDLNTKLNSVIRSKMSALGAAEAVKQRARKLEVAKSHKDMGQSERRIELQEARDRYAATSEELNSAKQQLNKIRQDFDATMEAKWAAFQLAA EAQRSANMNSERAGELAKEIHAMRESGHHLKAVSVEAHERQVKGLADKTRYVEAYKAAKQEVDVHVEQLRKEYDPELVRVLEERLAEITSEIEDLQAQMK RAHADEMDSVKGITSELNQATRKLQEIAEEESSLRVKVNNMRVEMENLKLEKEKLLEKEAQSSELVQEEESSGAAFKKLISQTEAVIKEAEDLQRIAKEA NQEAENARLRTQQAEEKLLLSAAETEVAKAAALRAHTEMRKLSETKGDDVLSEEPGKRMRITLLEYVALQKKLSESAGIAERTVAETMNQLELVKTKTNE ELKKLEANLKAIEEIKEATELALQGADAAETAQRALEAELKKLRDQEGSTGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12150			Plant protein of unknown funct...		Lus10038751 [exp]	0	1
					Lus10031358 [exp]	8.1	0.6065
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026073 [exp]	47.9	0.5839
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	110.2	0.5493
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	130.5	0.5319

Compare expression of checked genes

Lus10038751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.