Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47730 481 / 9e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G55840 447 / 1e-158 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39180 98 / 3e-22 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 97 / 6e-22 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 96 / 2e-21 ATSFH3 SEC14-like 3 (.1.2.3) AT4G34580 94 / 7e-21 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 92 / 2e-20 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G47510 91 / 2e-20 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 91 / 5e-20 ATSFH12 SEC14-like 12 (.1) AT2G16380 89 / 4e-19 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039106 [exp] 595 / 0 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10043160 [exp] 414 / 2e-142 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 398 / 9e-140 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016628 [exp] 389 / 1e-135 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022533 [exp] 335 / 1e-115 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10028938 [exp] 103 / 3e-24 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10007464 [exp] 100 / 2e-23 AT5G47510 421 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 99 / 9e-23 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 97 / 5e-22 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004000 [exp] 540 / 0 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.016G005100 [exp] 515 / 0 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G369400 [exp] 466 / 3e-166 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G076200 [exp] 97 / 5e-22 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G158700 [exp] 94 / 4e-21 AT5G47510 421 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G119700 [exp] 94 / 5e-21 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 93 / 1e-20 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.002G243000 [exp] 90 / 1e-19 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G230500 [exp] 89 / 4e-19 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 88 / 5e-19 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10038752 pacid=23150571 polypeptide=Lus10038752 locus=Lus10038752.g ID=Lus10038752.BGIv1.0 annot-version=v1.0 ATGGGGATGGGCTCTCAAGATGCTATTGATCAGTTGGGAGTTCTGATGGATCAAGTTGATGAGCCATTGAAGCGGACTTACCAGAATGTCCATCAAGGAT ATCAAGTGGAAACTCTTGCACGGTTCTTACGAGCTAGAGACTCGAATGTTCCAAAAGCTCATAAAATGTTAATAGACAGTCTGCACTGGAGAGTTCAGAA CGAGATTGACAGTATATTAGCAAAACCCATAGTTCCAGCTGATCTCTACAGAGCAGTCCGTGACTCACAGCTTATCGGAATGTCAGGTTACTCAAGAGAG GGACTACCTGTCTTTGCTATTGGGGTTGGACTCAGCACATTTGACAAGGCCTCTGTTCACTACTATGTTCAATCTCACATTCAGCTGAATGAATATCGGG ATCGTGTAATTTTGCCATCTGCGTCGAAAAAGTATGGTCGACCCATAACTACATGCATAAAGGTTTTGGATATGACAGGCTTGAAGCTTTCTGCACTGAA CCAAATAAAGTTGATGACTGTCATTTCGACGGTGGATGACTTGAATTATCCCGAGAAGACGAATACTTATTATATTGTAAATGCACCTTACATATTCTCG GCTTGCTGGAAGGTAGTGAAGCCTTTACTGCAAGAAAGAACCAGGAAGAAAGTGCAAGTTTTGAGTGGTAATGGAAGAGACGAACTCTTAAAGATAATGG ATATCTCATCACTCCCACATTTCTGCAAAAGGGAAGGCTCTGGATCATCCAAGCACTCAGACAAAAGTTCCGAGAGTTGCTATTCGCTGGACCATCCGTT CCACCAACATCTCTACAACCACATCAAACAGCAAGCATCAATTAATGCAACCACTGCACTGCTAAAGCAAGGATCTTTCCATGTGAATGTCCCCGAGTCA GCTGCCGAAGGAACCGAAATAGCAAAGAACATCGAATCTGAGCTACACAGGTTTCCTGAGAATGGGATTCCCAGAGGACTTTCTGGAATAAGTCTTGATG ACCTCAAAATCAAAGATGATCTGGAGTAG
AA sequence Show only first row Show all	>Lus10038752 pacid=23150571 polypeptide=Lus10038752 locus=Lus10038752.g ID=Lus10038752.BGIv1.0 annot-version=v1.0 MGMGSQDAIDQLGVLMDQVDEPLKRTYQNVHQGYQVETLARFLRARDSNVPKAHKMLIDSLHWRVQNEIDSILAKPIVPADLYRAVRDSQLIGMSGYSRE GLPVFAIGVGLSTFDKASVHYYVQSHIQLNEYRDRVILPSASKKYGRPITTCIKVLDMTGLKLSALNQIKLMTVISTVDDLNYPEKTNTYYIVNAPYIFS ACWKVVKPLLQERTRKKVQVLSGNGRDELLKIMDISSLPHFCKREGSGSSKHSDKSSESCYSLDHPFHQHLYNHIKQQASINATTALLKQGSFHVNVPES AAEGTEIAKNIESELHRFPENGIPRGLSGISLDDLKIKDDLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47730			Sec14p-like phosphatidylinosit...		Lus10038752 [exp]	0	1
AT3G14430			unknown protein		Lus10030201 [exp]	14.6	0.6618
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	24.6	0.6460
AT3G26670			Protein of unknown function (D...		Lus10012589 [exp]	26.8	0.6475
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	29.0	0.6329
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10041227 [exp]	33.0	0.6395
AT4G16444			unknown protein		Lus10016696 [exp]	38.7	0.6034
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10006328 [exp]	40.8	0.6202
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	57.4	0.6239
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10002650 [exp]	66.8	0.5803
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	76.1	0.5898

Compare expression of checked genes

Lus10038752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.