Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47750 748 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 697 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 683 / 0 D6PK D6 protein kinase (.1) AT2G44830 594 / 0 Protein kinase superfamily protein (.1) AT3G27580 588 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 559 / 0 Protein kinase superfamily protein (.1) AT1G79250 547 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 538 / 0 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 529 / 0 RSH3 root hair specific 3 (.1) AT3G52890 530 / 4e-179 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039105 [exp] 1044 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 720 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022534 [exp] 641 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 638 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 628 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 578 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 574 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 540 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 536 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004900 [exp] 823 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 809 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 667 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 644 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 637 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 587 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 563 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 558 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.010G175900 [exp] 557 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.008G080600 [exp] 553 / 0 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038753 pacid=23150444 polypeptide=Lus10038753 locus=Lus10038753.g ID=Lus10038753.BGIv1.0 annot-version=v1.0 ATGGCCTCAAGAACAGGCAGTAAATCTTTCCCCAAACAACAGCAGGAGGGAGCCAGTGTTCATAAGTTGAGGCTAGATGATCTCAAGCTTGTGTCTCCGA AATCTGAGATGAATAGTCATGGGCCGCAAGTGCCGATGCCGTTAGGAAACACACCAAAGCAAGCTACTACTGTTGAAGTCTCTGATAAGAAGAATAAGTT CCCAAATTCTAACAGAAAGGTGACTGCTGACTCGTTGAGTAGTAAATTGGGATCTACTGCGTCATCCTTGTCTTTGGATACCAGAGGTTCACAGGAGGGT GTTGTGTTTGATGAAGAGAAGAAAGCATCGGAGCATGGAAGTGTTAAGAACAGTTCGGTGTATGTCGAGAGTGGGAAGAGTAGCATGTGTAGAGGAAGCA CTAGCACCGATATCAGCGACGAGAGCTCGTGTAGCAGCTTCAGTAGCAGTATCAGCAAACCTCACAAGGCGAATGATTTGAGGTGGGAAGCCATTCAAGC TGTCAGGATGAGAGATGGGGTTTTGGGGTTGAATCATTTCAGGTTGCTAAAGAGGCTAGGTTGTGGCGACATTGGGAGCGTGTATCTGTCAGAGTTGAGT GGAACTAAGTGTTATTTCGCAATGAAAGTCATGGACAAAGGCTCTCTTGCGAGCCGTAAGAAGCTGCTTAGAGCTCAGACTGAAAGAGAAATACTTCAGT CTCTGGACCATCCTTTCCTTCCTACCCTTTATACCCACTTCGACACGGAGAAATTCTCTTGTTTGGTCATGGAGTTCTGCCCTGGAGGTGACTTGCACAC TCTCAGGCAGAGGCAACCAGGGAAGCATTTCACCGAACAAGCCGTAAAGTTCTATGTGGCTGAGGTCTTATTAGCTATGGAGTATCTCCACATGCTTGGA ATCATCTACCGGGATCTCAAGCCGGAGAATGTACTAGTCAGAGAGGATGGACATATAATGCTTTCCGACTTCGACCTTTCCCTTCGTTGCGCTGTCAGCC CAACACTCGTCAAATCCTCATCCATCATCGATGCAGATCATCCATCTCAAAAGAATCCAACTTACTGTGCTCAACCGGCTTGTATTCAGCCACCTTCCTG CATCCAACCGTCTTGTGTAGCTCCAACAACATGCTTCTCGCCACGTCTCTTTTCCAGCAAGTCCAAAAGGGAGAAGAAATCCAAGAATGATGTTGGTAAC CAAGTGAGACCTTTACCCGAACTCATGGCAGAGCCAACCGAGGCAAGATCAATGTCATTCGTCGGCACTCACGAGTATTTGGCTCCTGAGATCATTAAAG GCGAAGGCCACGGCAGTGCTGTAGATTGGTGGACGTTCGGGATCTTTCTGTACGAACTCTTGTATGGTAAAACTCCCTTCAAAGGATCGGGGAACCGGGC CACTTTATTCAACGTCGTTGGCCAGCCTCTTCGGTTCCCGGAATCGCCAGTCGTCAGCTTTGCAGCAAGGGACCTGATAAGGGGCCTTCTTGTGAAAGAA CCGCAGAACAGATTGGCGTACAAGAGAGGAGCCACTGAGGTAAAGCAGCATCCTTTCTTCGAAGGCGTGAACTGGGCGTTGATTCGTTGCGCTACTCCGC CCGAGATACCTAAGCCGGTCGAGATAGACCGCATCCCCGGACCCCCACCGCCTTCCACAAGTGGGAAAGCTGGTGGAGTTGTTGCTGTTGCTAATGCTGC TGCTGGTGGTGGACCTGGTCAAAAGGGTTCTTCTGATAATTACCTGGAGTTCGATTTCTTCTAG
AA sequence Show only first row Show all	>Lus10038753 pacid=23150444 polypeptide=Lus10038753 locus=Lus10038753.g ID=Lus10038753.BGIv1.0 annot-version=v1.0 MASRTGSKSFPKQQQEGASVHKLRLDDLKLVSPKSEMNSHGPQVPMPLGNTPKQATTVEVSDKKNKFPNSNRKVTADSLSSKLGSTASSLSLDTRGSQEG VVFDEEKKASEHGSVKNSSVYVESGKSSMCRGSTSTDISDESSCSSFSSSISKPHKANDLRWEAIQAVRMRDGVLGLNHFRLLKRLGCGDIGSVYLSELS GTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFDTEKFSCLVMEFCPGGDLHTLRQRQPGKHFTEQAVKFYVAEVLLAMEYLHMLG IIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSSIIDADHPSQKNPTYCAQPACIQPPSCIQPSCVAPTTCFSPRLFSSKSKREKKSKNDVGN QVRPLPELMAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLYGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKE PQNRLAYKRGATEVKQHPFFEGVNWALIRCATPPEIPKPVEIDRIPGPPPPSTSGKAGGVVAVANAAAGGGPGQKGSSDNYLEFDFF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	0	1
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	1.0	0.8979
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	1.7	0.8619
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	2.4	0.8637
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	4.0	0.8606
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	5.9	0.8446
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	6.0	0.8337
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	7.2	0.8333
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10043236 [exp]	8.5	0.7944
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	8.7	0.8084
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	8.8	0.8347

Compare expression of checked genes

Lus10038753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.