Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48750 394 / 4e-139 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT2G38620 261 / 1e-87 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 249 / 5e-82 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G20930 243 / 1e-79 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 240 / 2e-78 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G66750 211 / 9e-67 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G18040 206 / 2e-64 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 206 / 4e-64 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT5G63370 196 / 3e-59 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G67580 199 / 1e-58 CDKG;2 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038755 [exp] 401 / 1e-142 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10003236 [exp] 257 / 4e-84 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 253 / 9e-83 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10040593 [exp] 245 / 2e-80 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 244 / 5e-80 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040530 [exp] 199 / 2e-61 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10017371 [exp] 199 / 2e-61 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10015816 [exp] 201 / 4e-59 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 195 / 6e-59 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133500 [exp] 412 / 2e-146 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.006G113200 [exp] 258 / 2e-85 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.002G003400 [exp] 257 / 6e-85 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.016G142800 [exp] 255 / 2e-84 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 247 / 3e-81 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.012G052100 [exp] 207 / 2e-64 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 207 / 2e-64 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.008G008400 [exp] 202 / 1e-63 AT3G48750 293 / 3e-99 cell division control 2 (.1) Potri.010G056900 [exp] 200 / 6e-59 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 195 / 7e-59 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038754 pacid=23150668 polypeptide=Lus10038754 locus=Lus10038754.g ID=Lus10038754.BGIv1.0 annot-version=v1.0 ATGGAGCAGTACGAGAAAGTGGAGAAGATTGGGGAAGGAACTTATGGAGTGGTATATAAGGCCCGTGATCGAAACACCAATCAGACTATTGCTTTGAAGA AGATTCGTCTTGAACAGGAAGATGAGGGAGTGCCAAGCACCGCCATTAGAGAAATTTCGCTTCTGAAAGAAATGCAGCATGGTAACATTGTTAGGTGTGT GCTTGCTTGCTTATGTTGTTTTTTGAGTTGTCTAGCAAAACTGCTTTCGGTCATGGATGTGGTGCACAGTGAGAAACGGCTATATTTGGTTTTTGAGTAT CTGGACTTAGATTTGAAAAAGCACATGGACTCAAGTCCGGAGTTTGCTAAGGATCCGCGTATAGTCAAAACTTTCCTATACCAGATCCTCCGTGGCATTT CTTATTGCCATTCTCACAGGGTTCTTCATCGAGATCTAAAGCCACAGAATCTGCTTATTGATCGTCGTACCAATGCACTCAAGCTTGCAGATTTTGGTCT GGCCAGAGCTTTTGGTATCCCGGTCAGGACATTCACCCATGAGGTGGTGACTCTTTGGTATAGAGCCCCAGAGATTCTTCTCGGATCTCACCACTACTCT ACTCCAGTTGATGTGTGGTCTATAGGATGTATTTTCGCCGAAATGGTGAACCAGCGCCCCTTATTCCCCGGGGACTCTGAGATTGATGAGCTATTTAAGA TTTTCAGGTCTAGTAGCTTCCTGATTCTTTTCAGTTGCCATGGCATCCTTCTTATGCATATCTTTGTCTTGTCTTTGTGCACGATAAAGCTCATTGAATC TGGCAAAATAAATGATGCGGATTTGCATTGA
AA sequence Show only first row Show all	>Lus10038754 pacid=23150668 polypeptide=Lus10038754 locus=Lus10038754.g ID=Lus10038754.BGIv1.0 annot-version=v1.0 MEQYEKVEKIGEGTYGVVYKARDRNTNQTIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRCVLACLCCFLSCLAKLLSVMDVVHSEKRLYLVFEY LDLDLKKHMDSSPEFAKDPRIVKTFLYQILRGISYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYS TPVDVWSIGCIFAEMVNQRPLFPGDSEIDELFKIFRSSSFLILFSCHGILLMHIFVLSLCTIKLIESGKINDADLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	0	1
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	2.0	0.8881
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	2.2	0.8936
AT2G15240			UNC-50 family protein (.1)		Lus10002813 [exp]	3.2	0.8412
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	5.9	0.8450
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10014172 [exp]	6.0	0.8379
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	6.3	0.8458
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	6.7	0.8789
AT5G22040			unknown protein		Lus10000457 [exp]	7.9	0.8292
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006057 [exp]	8.0	0.8351
AT1G35780			unknown protein		Lus10009931 [exp]	8.8	0.8368

Compare expression of checked genes

Lus10038754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.