Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48750 468 / 6e-169 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT2G38620 307 / 3e-105 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT1G20930 301 / 9e-103 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT3G54180 295 / 2e-100 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G76540 295 / 2e-100 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT5G63370 248 / 6e-80 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G67580 255 / 8e-80 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G18040 245 / 9e-80 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 245 / 2e-79 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 243 / 3e-79 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038754 [exp] 414 / 1e-147 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10040593 [exp] 297 / 4e-101 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10003236 [exp] 299 / 5e-101 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 295 / 1e-99 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10021611 [exp] 293 / 2e-99 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10015816 [exp] 252 / 1e-78 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 251 / 3e-78 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 242 / 5e-77 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 240 / 2e-76 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133500 [exp] 489 / 3e-177 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.016G142800 [exp] 310 / 2e-106 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.002G003400 [exp] 308 / 3e-105 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.006G113200 [exp] 305 / 4e-104 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 298 / 8e-102 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.010G056900 [exp] 254 / 2e-79 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G052100 [exp] 242 / 3e-78 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 242 / 3e-78 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.008G178200 [exp] 248 / 2e-77 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 241 / 2e-75 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038755 pacid=23150536 polypeptide=Lus10038755 locus=Lus10038755.g ID=Lus10038755.BGIv1.0 annot-version=v1.0 ATGGAGCAGTACGAGAAAGTGGAGAAGATTGGGGAGGGAACATACGGAGTGGTGTATAAGGCTCGTGATCGCATCACCAATGAGACTATTGCTTTGAAGA AGATTCGCCTCGAGCAGGAAGATGAGGGTGTCCCGAGCACCGCCATTAGAGAAATTTCGCTCCTGAAAGAAATGCAGCACTGCAACATTGTCAGGTTGCA GGATGTAGTGCACAGTGAGAAGCGCCTATACTTAGTTTTTGAGTACCTGGACCTAGATTTGAAGAAACATATGGACTCTAGTCCAGAGTTTGGCAAGGAT CCCCGAATAGTCAAAACTTTCCTTCACCAAATCCTGCGTGGCATTGCTTATTGCCATTCGCACAGGGTTCTTCATCGAGATCTGAAGCCACAGAATCTGC TTATTGATCGCCGAACCAATTCACTCAAGCTGGCAGATTTTGGGCTGGCCAGAGCTTTTGGTATACCTGTCAGGACATTCACCCATGAGGTGGTGACTCT TTGGTACAGAGCCCCAGAGATTCTTCTCGGATCTCGCCACTACTCTACTCCAGTCGATATATGGTCTGTTGGATGTATTTTTGCGGAGATGGTGAACAAG AGCCCGTTGTTTCCTGGGGACTCCGAGATTGATCAGCTATTCAAAATTTTCAGAATCACGGGTACGCCAAATGAGGACATCTGGCCTGGAGTAACATCTT TGCCCGACTTCAAGTCCACCTTCCCAAAATGGCCTTCCAAGGTTTCATGCTTCATTCCGCTAGTCTTTCCAGCTTCGGACTAG
AA sequence Show only first row Show all	>Lus10038755 pacid=23150536 polypeptide=Lus10038755 locus=Lus10038755.g ID=Lus10038755.BGIv1.0 annot-version=v1.0 MEQYEKVEKIGEGTYGVVYKARDRITNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHCNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFGKD PRIVKTFLHQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNK SPLFPGDSEIDQLFKIFRITGTPNEDIWPGVTSLPDFKSTFPKWPSKVSCFIPLVFPASD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	0	1
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	1.7	0.9008
AT1G09750			Eukaryotic aspartyl protease f...		Lus10014173 [exp]	3.0	0.8583
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	4.2	0.8676
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	5.9	0.8259
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	6.3	0.8323
AT5G17910			unknown protein		Lus10009544 [exp]	6.9	0.8420
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	8.4	0.8159
AT1G15780			unknown protein		Lus10015322 [exp]	10.6	0.7128
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	12.8	0.8157
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	13.0	0.8284

Compare expression of checked genes

Lus10038755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.