Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55670 100 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G13190 66 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039103 [exp] 313 / 3e-102 AT1G13190 424 / 2e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10019147 [exp] 278 / 3e-90 AT1G13190 418 / 3e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038758 [exp] 244 / 2e-83 AT5G55670 75 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038759 [exp] 64 / 8e-12 AT1G13190 378 / 1e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182500 [exp] 233 / 4e-73 AT1G13190 224 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G051600 [exp] 228 / 4e-71 AT1G13190 198 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038757 pacid=23150326 polypeptide=Lus10038757 locus=Lus10038757.g ID=Lus10038757.BGIv1.0 annot-version=v1.0 ATGGGTAGAGGAGCTGGTTATGGAGGATTTGGAGGAGGTCCTGGATTTCCGGGCATGCTTCCTTCTTTTCCTTCTGTTAATACAATGGGACTTGCTGGTG TGGCGCCTCATGTCAACCCGGCATTCTTCGGCCGCGGAATGGCTCCAAATGCTATGGGTATGATGGGTGCCTCGGGAATGGAGGGGCCTGGCATGGGAAT GTGGTCTGAAACAAGCATGGGTGGATGGGGAGAAGAGCATGGAAGAAAGACAAGAGAATCAAGTTATGGTGCTGAAGATGGCGCGTCTGACTATGGTTAT GGAGAGGGAAGTCAAGAAAAGGGTGGACGTTCAAGTGCTGCTCCCCGTGAAAAAGAAAGGTCTTCTGGACGTGAACTGTCAGGGACCTCCGATAGGAGGC ATCGTGATGAGAGGGAGCCGGACTATGACAGATCAGAACGAGATCACAGGGAGCCACGTTATAGGGAGGAAAAAGATAGTCATAGAGATCACCGGAAGAA AGAACGTGACTCAGGCTATGAGGATGATTGGGACAGGGGCCAGTCTTCGTCGAGGCAACAAAGTAGGTCTCGTGCTATGCCAGAAGAAGCTCACAGGTCA AGGTCAAGGGATGTGGATTATGGCAAGAGGAGACGTTTGCCATCAGAGTGA
AA sequence Show only first row Show all	>Lus10038757 pacid=23150326 polypeptide=Lus10038757 locus=Lus10038757.g ID=Lus10038757.BGIv1.0 annot-version=v1.0 MGRGAGYGGFGGGPGFPGMLPSFPSVNTMGLAGVAPHVNPAFFGRGMAPNAMGMMGASGMEGPGMGMWSETSMGGWGEEHGRKTRESSYGAEDGASDYGY GEGSQEKGGRSSAAPREKERSSGRELSGTSDRRHRDEREPDYDRSERDHREPRYREEKDSHRDHRKKERDSGYEDDWDRGQSSSRQQSRSRAMPEEAHRS RSRDVDYGKRRRLPSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038757 [exp]	0	1
AT3G47940			DNAJ heat shock family protein...		Lus10036668 [exp]	2.8	0.7395
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	8.1	0.7417
AT2G33585			unknown protein		Lus10016044 [exp]	16.1	0.6409
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	17.3	0.7174
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10025111 [exp]	19.9	0.6535
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	23.6	0.7219
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	32.3	0.6438
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	36.0	0.6910
					Lus10014600 [exp]	36.9	0.6608
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10012194 [exp]	39.2	0.6658

Compare expression of checked genes

Lus10038757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.