Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55670 64 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G13190 45 / 5e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038757 [exp] 246 / 4e-84 AT5G55670 148 / 4e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039103 [exp] 245 / 1e-77 AT1G13190 424 / 2e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10019147 [exp] 214 / 6e-67 AT1G13190 418 / 3e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182500 [exp] 170 / 2e-50 AT1G13190 224 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G051600 [exp] 166 / 4e-49 AT1G13190 198 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038758 pacid=23150716 polypeptide=Lus10038758 locus=Lus10038758.g ID=Lus10038758.BGIv1.0 annot-version=v1.0 ATGGGTGGATGGGGAGAAGAGCATGGAAGAAAGACAAGAGAATCAAGTTATGGTGCTGAAGATGGCGCATCTGACTATGGTTATGGAGAGGCAAGTCAAG AAAAGGGTGGACGCTCAAGTGCTGCTCCCCGTGAAAAAGAAAGGTCTTCTGGACGTGAACTGTCAGGGACCTCCGATAGGAGGCATCGTGATGAGAGGGA GCCGGACTATGACAGATCAGAACGAGATCACAGGGAGCCTCGTTATAGGGAGGAAAAAGATAGTCATAGAGATCACAGGAAGAAAGAACGTGACTCAGGC TATGAGGATGATTGGGACAGGGGCCAGTCTTCGTCGAGGCAACAAAGTAGGTCTCGTGCTATGCCAGAAGAAGCTCACAGGTCAAGGTCAAGGGATGTGG ATTATGGCAAGAGGAGACGTTTGCCATCAGAGTGA
AA sequence Show only first row Show all	>Lus10038758 pacid=23150716 polypeptide=Lus10038758 locus=Lus10038758.g ID=Lus10038758.BGIv1.0 annot-version=v1.0 MGGWGEEHGRKTRESSYGAEDGASDYGYGEASQEKGGRSSAAPREKERSSGRELSGTSDRRHRDEREPDYDRSERDHREPRYREEKDSHRDHRKKERDSG YEDDWDRGQSSSRQQSRSRAMPEEAHRSRSRDVDYGKRRRLPSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	0	1
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	4.0	0.7855
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	7.6	0.7875
AT5G13440			Ubiquinol-cytochrome C reducta...		Lus10028416 [exp]	8.9	0.7405
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10029014 [exp]	9.5	0.7242
AT3G57910			D111/G-patch domain-containing...		Lus10023819 [exp]	10.2	0.7290
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	10.6	0.7788
AT3G07790			DGCR14-related (.1)		Lus10012321 [exp]	16.6	0.7614
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	17.9	0.7353
AT3G57990			unknown protein		Lus10004184 [exp]	20.7	0.7012
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	22.3	0.7798

Compare expression of checked genes

Lus10038758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.