Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13190 254 / 3e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55670 144 / 7e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G39260 54 / 5e-09 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT2G21660 56 / 7e-09 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT5G04600 55 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 51 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 54 / 2e-07 CSTF64 cleavage stimulating factor 64 (.1) AT4G13850 50 / 2e-07 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G20930 52 / 7e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 49 / 7e-07 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039103 [exp] 659 / 0 AT1G13190 424 / 2e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10019147 [exp] 535 / 0 AT1G13190 418 / 3e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10042321 [exp] 55 / 2e-08 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10028714 [exp] 57 / 3e-08 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 56 / 6e-08 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10026344 [exp] 53 / 6e-08 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 53 / 6e-08 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10017923 [exp] 56 / 7e-08 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10040454 [exp] 53 / 1e-07 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182500 [exp] 356 / 2e-115 AT1G13190 224 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G051600 [exp] 348 / 2e-112 AT1G13190 198 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 53 / 4e-08 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G061200 [exp] 56 / 6e-08 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.004G155300 [exp] 52 / 7e-08 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G319900 [exp] 51 / 1e-07 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.009G116400 [exp] 51 / 2e-07 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.017G059000 [exp] 50 / 4e-07 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.009G160300 [exp] 49 / 5e-07 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G157300 [exp] 49 / 9e-07 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10038759 pacid=23150354 polypeptide=Lus10038759 locus=Lus10038759.g ID=Lus10038759.BGIv1.0 annot-version=v1.0 ATGATGGTAATTGTTAGCGACAGCCAACGTGTCCGTACTTTCCGTTCTAAAAAGGTGTTCCTTGCTCCTCACCTTGCTTGTAACGCTGTTCCAGGAGTTG ACAAATTCTGCGATTGTTGCGGCTTCTCTGTGCGTCCTGATTTGGGTCTAATGGCTGATGAGCAAATTGAATTTGAGGATGAGGAATATGGAGGTGCCCA GAAGTTACAGTACCAAGGGAGTGGTACCATTCCTGCTCTTGCAGATGAAGAGATGGGCGAAGATGATGAGTATGATGATCTTTATAATGATGTGAATGTT GGTGAGAATTTCCTACAAATGCATCGATCTGACCCACCAGCCCAACCTGCTAATCCGAGTAATGGGACATTTCAAACTCAGAATGCTCCCGCATCAAGAG GTGAATCGGCTACTGGTGTTGGTGCTGGTTCACAAGGGGTACATATTCCCCAAGTTGCTGTCGAAGGGAAGTATTCTAATCCTGCAGCAAATTTCCAAGA GAAAAAGGAGGTTCCTGGGATAGTCAAAGGACCAGAAACGGGTCCAGTTGGTTATCCAGATGGTTCTGCTTCACAAAAAGGAAAGGTTATGGATACGGCA CTTGATACTCCAGTTGGAAATATGGGGTTCCGAGGAGCAGCGTCCAATATTGCAGTTAACCCGTCTGATATGCCTAGAAAAGTCCCAATTGAGCTGTCAT CTATGCCAAGTACAGTAGCAGGCGGAGCTCCGCAGATGCCTGCTAATCAAATGAACATAAATATGGATGCAAATATCATGAATGAAAATCAGATAAGACC TCCTATAGAGAATGGTCCAACTATGCTGTTTGTTGGAGAATTGCATTGGTGGACGACGGATGCAGAGATTGAGGGTGTTTGTTCTCAATATGGAAGAGTG AAGGAAATTAAGTTCTTTGATGAAAGAGCAAGTGGTAAGTCCAAAGGTTATTGCCAAGTTGAATTTTATGATGCAAATTCTGCAGCCTCTTGCAAAGAGG GAATGAATGGGTTTATGTTTAACGGCCGAGCTTGTATTGTGGCCTTTGCTTCTCCACAATCGATAAAGCAAATGGCAGCATCTTACACAAACAAAAATCA AAATCAGCCTCAGCTACAGACACAAGGAAGGAGACCTCTGAATGATGGTGCTGGGAGAGGTGGCGCTGTGAATTATCCAGCTGGAGATGGTGGGAGGAAC TTTGGAAGGGGCGGTGGTTGGGGACGCGGTGCACCTGGTGTTCTGAACAAAGGTCCTGGGGTTGGAGGACCAATTAGAGGAAGAGGAGGCATGGGTGCTA AGAATATGATGGGGGGTGCTGTTGGTGTTGGAGGTGGCATGAATGGGGGAGGTTATGGACAGGGCTTTGGTGGTCCGACATTTGGTGGTCCTGCTGCTGG AATGATGCCTCCACATGCGATGATGGGAGCTGGATTTGATGCAGCATACATGGGTAGAGGAGCTGGTTATGGAGGATTTGGAGGAGGTCCTGGATTTCCG GGCATGCTTCCTTCTTTTCCTTCTGTTAATACAATGGGACTTGCTGGTGTGGCGCCTCATGTCAACCCGGCGTTCTTTGGCCGTGGAATGGCTCCAAATG CGAATTACACAAAATGCGGTGGGTATGATGTGTGGCTCGGGAATGGAGGGGCCTGGCATGGGAATGTGGTCTGA
AA sequence Show only first row Show all	>Lus10038759 pacid=23150354 polypeptide=Lus10038759 locus=Lus10038759.g ID=Lus10038759.BGIv1.0 annot-version=v1.0 MMVIVSDSQRVRTFRSKKVFLAPHLACNAVPGVDKFCDCCGFSVRPDLGLMADEQIEFEDEEYGGAQKLQYQGSGTIPALADEEMGEDDEYDDLYNDVNV GENFLQMHRSDPPAQPANPSNGTFQTQNAPASRGESATGVGAGSQGVHIPQVAVEGKYSNPAANFQEKKEVPGIVKGPETGPVGYPDGSASQKGKVMDTA LDTPVGNMGFRGAASNIAVNPSDMPRKVPIELSSMPSTVAGGAPQMPANQMNINMDANIMNENQIRPPIENGPTMLFVGELHWWTTDAEIEGVCSQYGRV KEIKFFDERASGKSKGYCQVEFYDANSAASCKEGMNGFMFNGRACIVAFASPQSIKQMAASYTNKNQNQPQLQTQGRRPLNDGAGRGGAVNYPAGDGGRN FGRGGGWGRGAPGVLNKGPGVGGPIRGRGGMGAKNMMGGAVGVGGGMNGGGYGQGFGGPTFGGPAAGMMPPHAMMGAGFDAAYMGRGAGYGGFGGGPGFP GMLPSFPSVNTMGLAGVAPHVNPAFFGRGMAPNANYTKCGGYDVWLGNGGAWHGNVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	0	1
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	3.7	0.8443
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	4.6	0.8910
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	5.9	0.8446
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019763 [exp]	6.5	0.8080
AT3G22430			unknown protein		Lus10041205 [exp]	8.0	0.8468
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	8.8	0.8498
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037261 [exp]	11.3	0.7466
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	11.7	0.8385
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	12.0	0.8136
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	13.0	0.8160

Compare expression of checked genes

Lus10038759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.