Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47760 305 / 1e-105 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1) AT5G36700 249 / 1e-82 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4) AT5G36790 249 / 1e-82 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038761 [exp] 364 / 4e-129 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1) Lus10039102 [exp] 353 / 3e-124 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1) Lus10026241 [exp] 249 / 4e-83 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10042429 [exp] 248 / 6e-82 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10033024 [exp] 164 / 2e-51 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004200 [exp] 306 / 4e-106 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1) Potri.008G077400 [exp] 252 / 1e-83 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.010G180400 [exp] 249 / 2e-82 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.006G003501 [exp] 88 / 3e-23 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038760 pacid=23150621 polypeptide=Lus10038760 locus=Lus10038760.g ID=Lus10038760.BGIv1.0 annot-version=v1.0 ATGGTGAAATTCAGCCGCTGTCGTAGCAGTACTAAGAGTAACCAGCTGCTTCTACTCGTCATCGTCCTTCCCGTGGCGGAAGATGCAGAGAAAAGAGCAG AATGGAAATCAAATACTCTCTTCGAACACGATAAAACTGTTGGAGCAGTTGTTGTGGGATTAGATCCCTATGTCAACTACCACAAGCTTCAATATGGAAC CCTCTGCATACGTGAGAATCCGGGTTGCCTTTTCATCGCAACTAACCGCGATGCAGTTGGCCACATGACTGATCTTCAAGAGTGGCCTGGTGCTGGGTGT ATGGTGGCTGCACTGCGTGGTTCAACTGAGAGAGAACCTATTGTAGTTGGGAAACCATCCACCTTTATGATGGACTTCCTATTGCAGAAGTACAACATCA GTACGTCGAAAATGTGTATGGTTGGAGATCGACTGGACACTGATATCCTATTTGGACAAAGCTCTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTAAC AACTGAATCCGCTCTGCACGACCCAGCAAACCGGATCAAACCAGATTATTACACCGCTCAAGTTTCCAACTTGATTGGGTTGCTTGGATCATAA
AA sequence Show only first row Show all	>Lus10038760 pacid=23150621 polypeptide=Lus10038760 locus=Lus10038760.g ID=Lus10038760.BGIv1.0 annot-version=v1.0 MVKFSRCRSSTKSNQLLLLVIVLPVAEDAEKRAEWKSNTLFEHDKTVGAVVVGLDPYVNYHKLQYGTLCIRENPGCLFIATNRDAVGHMTDLQEWPGAGC MVAALRGSTEREPIVVGKPSTFMMDFLLQKYNISTSKMCMVGDRLDTDILFGQSSGCKTLLVLSGVTTESALHDPANRIKPDYYTAQVSNLIGLLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038760 [exp]	0	1
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	5.2	0.7142
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	5.5	0.7183
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	6.0	0.7762
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	12.3	0.6744
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	12.7	0.7595
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	14.5	0.7294
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	15.2	0.7245
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	27.7	0.6952
AT4G28240			Wound-responsive family protei...		Lus10018535 [exp]	29.7	0.7145
AT3G22550			Protein of unknown function (D...		Lus10035894 [exp]	31.8	0.7137

Compare expression of checked genes

Lus10038760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.