Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47760 440 / 2e-157 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1) AT5G36700 379 / 2e-132 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4) AT5G36790 379 / 2e-132 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039102 [exp] 556 / 0 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1) Lus10026241 [exp] 379 / 4e-133 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10042429 [exp] 379 / 6e-132 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10038760 [exp] 364 / 5e-129 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1) Lus10033024 [exp] 325 / 2e-113 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004200 [exp] 456 / 1e-163 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1) Potri.008G077400 [exp] 382 / 2e-133 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.010G180400 [exp] 382 / 3e-133 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.006G003501 [exp] 92 / 1e-23 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038761 pacid=23150695 polypeptide=Lus10038761 locus=Lus10038761.g ID=Lus10038761.BGIv1.0 annot-version=v1.0 ATGAGCTCACAAGCACCATCAACAGCGATTCAGCTCCTCAATCCTGATACTGCTCAATCTCTCGTCGACTCCGTTGAAGCTTTCCTCTTTGATTGCGATG GCGTGATCTGGAAGGGAGACAAGCTCATCGACGGCGTCTCTCAAACTCTTGATTTGCTCCGCTCCAAGGGGAAGAAGCTGGTTTTCGTCACCAACAATTC CACCAAGTCCAGACGCCAATATGCCGCCAAATTCCATTTTCTTGGCATTTCAGTCAGCGAGGTATACGTGATTGGCATGGAAGGAATAGTGCAGGAATTG CAGCAGGCTGGTTTTACAGCTCTGGGAGGTCCGGAAGATGCAGAGAAAAGAGCAGAATGGAAATCAAATACTCTCTTCGAACACGATAAAACTGTTGGAG CAGTTGTTGTGGGATTAGATCCCTATGTCAACTACCACAAGCTTCAATATGGAACCCTCTGCATACGTGAGAATCCGGGTTGCCTTTTCATCGCAACTAA CCGCGATGCAGTTGGCCACATGACTGATCTTCAAGAGTGGCCTGGTGCTGGGTGTATGGTGGCTGCACTGCGTGGTTCAACTGAGAGAGAACCTATTGTA GTTGGGAAACCATCCACCTTTATGATGGACTTCCTATTGCAGAAGTACAACATCAGTACGTCGAAAATGTGTATGGTTGGAGATCGACTGGACACTGATA TCCTATTTGGACAAAGCTCTGGTTGCAAAACTCTTCTTGTTCTCTCAGGTGTAACAACTGAATCCGCTCTGCACGACCCAGCAAACCGGATCAAACCAGA TTATTACACCGCTCAAGTTTCCAACTTGATTGGGTTGCTTGGATCATAA
AA sequence Show only first row Show all	>Lus10038761 pacid=23150695 polypeptide=Lus10038761 locus=Lus10038761.g ID=Lus10038761.BGIv1.0 annot-version=v1.0 MSSQAPSTAIQLLNPDTAQSLVDSVEAFLFDCDGVIWKGDKLIDGVSQTLDLLRSKGKKLVFVTNNSTKSRRQYAAKFHFLGISVSEVYVIGMEGIVQEL QQAGFTALGGPEDAEKRAEWKSNTLFEHDKTVGAVVVGLDPYVNYHKLQYGTLCIRENPGCLFIATNRDAVGHMTDLQEWPGAGCMVAALRGSTEREPIV VGKPSTFMMDFLLQKYNISTSKMCMVGDRLDTDILFGQSSGCKTLLVLSGVTTESALHDPANRIKPDYYTAQVSNLIGLLGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038761 [exp]	0	1
AT4G19500			nucleoside-triphosphatases;tra...		Lus10006907 [exp]	3.5	0.8044
AT5G14500			aldose 1-epimerase family prot...		Lus10014621 [exp]	10.4	0.8347
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	18.5	0.8128
AT5G08391			Protein of unknown function (D...		Lus10035201 [exp]	27.5	0.7819
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10019513 [exp]	28.4	0.7445
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	28.5	0.8042
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	29.8	0.8009
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10009472 [exp]	29.9	0.7887
AT5G02140			Pathogenesis-related thaumatin...		Lus10003962 [exp]	30.2	0.7954
AT5G62960			unknown protein		Lus10027692 [exp]	31.2	0.7699

Compare expression of checked genes

Lus10038761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.