Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52220 239 / 2e-79 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039101 [exp] 329 / 4e-115 AT3G52220 283 / 7e-97 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240300 [exp] 259 / 9e-88 AT3G52220 234 / 4e-78 unknown protein Potri.008G019100 [exp] 246 / 2e-82 AT3G52220 232 / 4e-77 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10159 [flax] [poplar] MMtag Multiple myeloma tumor-associated
Representative CDS sequence Show only first row Show all	>Lus10038762 pacid=23150258 polypeptide=Lus10038762 locus=Lus10038762.g ID=Lus10038762.BGIv1.0 annot-version=v1.0 ATGTATCATCCGACCCGAGGCGGCGTTCGCGGTGGCCGAGATCAATTTACTTGGGATGAAGTCAAGGTTGATAAATACCGTGAAAATTATATTGGTCACA GTCTCAAGGCACCTGTTGGGAGATGGCAGAAAGGGAAAGATCTACACTGGTATACTAGGGACAAGAAATCTGGTACTTCAGACGATGCTCTAAAGGATGA GATTAAAAGGATCAAGGAAGAGGAGGAACAAGCCATGAGGGAGACCCTTGGCTTAGCACCAAAACGTTCTTCCCGGCCACAAGGAAACCGGCTTGATAAG CACGAGTTTAATGAACTGGTGAAGCGCGGTTCAACAGCAGAGGACTTGGGAGCTGGGCATGCTGATGCAGCACGTGTCGATGGACTTGGCTTCTCTAAGG CACCCCGTCCTTGGGAAGACCCATCAACCCTTCCATCCTCAGGAACAGAGGTATTACCCGAGCTGCCAAAGGTCCACGATATCCCTAATCCGCCGCCAGT GGAGAACCGCAAGGAAGAAGAATCAAGGGACGAAGCCAGCCGGAAGGAGAGAAGGCATGAGGAGAAGCAGCAAGAAAAGGAGAAGAGAAGGGAGAAGAAG GAGAAGCATAAAAAGCATGAGAAGAGGCATTCCCGCGACTCGGACGACAAGAGGAAACACAGGGATGACAACAAGGAGAGGAAGAAGAGAAGAAGACACG ATTCCGATGACGAGTGA
AA sequence Show only first row Show all	>Lus10038762 pacid=23150258 polypeptide=Lus10038762 locus=Lus10038762.g ID=Lus10038762.BGIv1.0 annot-version=v1.0 MYHPTRGGVRGGRDQFTWDEVKVDKYRENYIGHSLKAPVGRWQKGKDLHWYTRDKKSGTSDDALKDEIKRIKEEEEQAMRETLGLAPKRSSRPQGNRLDK HEFNELVKRGSTAEDLGAGHADAARVDGLGFSKAPRPWEDPSTLPSSGTEVLPELPKVHDIPNPPPVENRKEEESRDEASRKERRHEEKQQEKEKRREKK EKHKKHEKRHSRDSDDKRKHRDDNKERKKRRRHDSDDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52220			unknown protein		Lus10038762 [exp]	0	1
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	1.7	0.9608
AT4G14385			unknown protein		Lus10003559 [exp]	2.6	0.9495
AT1G59600		ZCW7	ZCW7 (.1)		Lus10018676 [exp]	2.8	0.9483
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	4.5	0.9535
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	4.9	0.9506
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	5.7	0.9545
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	6.7	0.9478
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	7.9	0.9538
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	8.2	0.9536
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	11.3	0.9312

Compare expression of checked genes

Lus10038762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.