Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47800 609 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G67900 389 / 4e-128 Phototropic-responsive NPH3 family protein (.1.2.3) AT4G37590 340 / 1e-109 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT2G14820 341 / 2e-109 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G31820 335 / 7e-108 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT5G67440 331 / 3e-106 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 322 / 3e-104 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT3G26490 317 / 5e-101 Phototropic-responsive NPH3 family protein (.1) AT1G30440 271 / 2e-82 Phototropic-responsive NPH3 family protein (.1) AT5G03250 257 / 9e-78 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039099 [exp] 1049 / 0 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 397 / 4e-131 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10014632 [exp] 359 / 2e-116 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 351 / 2e-113 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 359 / 1e-112 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 345 / 6e-111 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 324 / 1e-103 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 321 / 2e-102 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 271 / 1e-82 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G003700 [exp] 739 / 0 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.006G003000 [exp] 701 / 0 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 418 / 2e-139 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 416 / 8e-139 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.009G089500 [exp] 362 / 6e-118 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 359 / 7e-117 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 352 / 1e-113 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 351 / 1e-113 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 342 / 4e-110 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 313 / 2e-98 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10038763 pacid=23150408 polypeptide=Lus10038763 locus=Lus10038763.g ID=Lus10038763.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAACTGGGGAATCAGCCAGATACCTTCTACACAGAAGAAGCCACGAGGTCTTTGGTATCAGATGTCCCAAGTGACCTTGTTATAAGAA TCAACGGGATTACGTATCTGCTCCACAAGTTTGCACTTCTTCCAAAATGTGGGCTTCTACAACGACTGTGTTCCGATACACCCGAATCCAGCACTGTAAC AGTGGAGCTCCATGACATTCCAGGAGGGGAAGAGGCGTTTGAACTGTGTGCCAAGTACTGCTATGGAATCACAATCAGTCTCAGTGCACACAACATTGTG CCAGCATTCTGTGCTGCTAAATTCCTTCGCATGACTGAATCAGTTGATAATGGTAATTTTGTACTTAAACTTGAGGCGTTCTTCAACTCGTGCGTCCTTG AAAGTTGGAAGGATCCAATCCTCGCACTTCAGACAACAGTGAAGCTAACTGAATGGTCTGAAAATCTCGGTATCATCAGAAGATGCATCGAGTCTATTGT AGATAAAATTCTCACGCCTCCGACAAAGGTCAGGTGGTCCTTCACTTATACAAGACCAGGGTTCAACAAACACGAGCAATCCGTCCCAAAAGATTGGTGG ACAGAAGATATAACAGACCTTGACATAGACCTCTTTAGGTGTATCATTACAGCTATCAAATCAACATATATGTTGCCTCCTCAGCTCATTGGAGAGGCTC TACATGTCTACGCTTGTCGTCGGCTACCAGATGCTACAAAACTCAGGCCCCCGTATAAGACTGAGTCTTCTTCTCAAGCTAGACAAGTTTCAGACAAGGA AAGAAGAGTTCTTGAAACCATTGTGAGTATGATTCCTGTAGATAGGGGCTCAGTCTCTGCAGGCTTCTTGCTCAAGCTTCTCAACATCGCAAACTACTTG GCTGCATCTCCCGCGACAAAGGCAGAACTCGTAAGACGGTCCAGTTTGCAGTTGGAGGAGGCAACTCTCCCGGATTTGCTCTTCCTTTCACATTCATCCT TGGATCAGCACCATTATGATGTTGACTCAGTTGCAGCTATTCTGGAAAGTTTCTTGATCCTGTGGAGACGTGTATCACAAGAACCTGTGGAAGAAAGCCA GATTGTGACATTAATTAGAAGGGTTGGTAAGCTTATTGATTCTTATCTTCAGGTGGTAGCAAAGGATCCAGACATGCCTGTTTCAAAGTTGGAACATCCT GATTTCAGCAAGGCAGAGAGGAAGCAGCTGTGCAGGATGTTAGACTGCCAGAAACTGTCCCCGGAAGTTCGAGCACACGCTGTCAAGAACGAAAGGCTGC CGCTAAGAACAGTCGTTCAAGTTCTCTTCTTTGATCAGGATACAGCAAACAGCAGAACTCTGTCTCAGCAACTGTCGTTCAAAGGAAAGCAGACATCATC AATGGCTGCTGCTGATGATCTAAGCAAGCTACATTTGGTTTCGAACGGTCAACCGAGTAGAGTCGAAGGGATGAAAAGGAGTTCAACGCCAGAGAGTAGC AGCAACACAGGAAGTCATCAGCATGAACGAGCGAGAAAACCAGATAGAATGCTCAAGGAGGAAAAGAAGGTGGTGAGAGGAGAAATAGAAGAAGGAGGAG GGAGTTCTGGTTCTGGCTCTGGGTCTGGTTCTGGAAGCAAGTTGGAGACGAGGAAGGTGATAGGAAACAGAAGTACTACTGGATCAGACCATGGAAGGGA TAAAGCTAAGGATCGATAG
AA sequence Show only first row Show all	>Lus10038763 pacid=23150408 polypeptide=Lus10038763 locus=Lus10038763.g ID=Lus10038763.BGIv1.0 annot-version=v1.0 MKFMKLGNQPDTFYTEEATRSLVSDVPSDLVIRINGITYLLHKFALLPKCGLLQRLCSDTPESSTVTVELHDIPGGEEAFELCAKYCYGITISLSAHNIV PAFCAAKFLRMTESVDNGNFVLKLEAFFNSCVLESWKDPILALQTTVKLTEWSENLGIIRRCIESIVDKILTPPTKVRWSFTYTRPGFNKHEQSVPKDWW TEDITDLDIDLFRCIITAIKSTYMLPPQLIGEALHVYACRRLPDATKLRPPYKTESSSQARQVSDKERRVLETIVSMIPVDRGSVSAGFLLKLLNIANYL AASPATKAELVRRSSLQLEEATLPDLLFLSHSSLDQHHYDVDSVAAILESFLILWRRVSQEPVEESQIVTLIRRVGKLIDSYLQVVAKDPDMPVSKLEHP DFSKAERKQLCRMLDCQKLSPEVRAHAVKNERLPLRTVVQVLFFDQDTANSRTLSQQLSFKGKQTSSMAAADDLSKLHLVSNGQPSRVEGMKRSSTPESS SNTGSHQHERARKPDRMLKEEKKVVRGEIEEGGGSSGSGSGSGSGSKLETRKVIGNRSTTGSDHGRDKAKDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10038763 [exp]	0	1
AT5G14510			ARM repeat superfamily protein...		Lus10002521 [exp]	2.0	0.8946
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	11.8	0.9069
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	18.1	0.8988
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	19.2	0.8953
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	21.2	0.8828
AT5G55950			Nucleotide/sugar transporter f...		Lus10016648 [exp]	25.5	0.8821
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	28.2	0.8896
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	28.6	0.8941
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	30.2	0.8896
AT2G21300			ATP binding microtubule motor ...		Lus10031086 [exp]	32.3	0.8810

Compare expression of checked genes

Lus10038763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.