Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55990 374 / 8e-134 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G26570 373 / 2e-133 ATCBL3 calcineurin B-like 3 (.1.2) AT4G16350 293 / 1e-101 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G17615 245 / 7e-83 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 241 / 1e-81 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT5G24270 237 / 2e-79 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G26560 236 / 2e-79 CBL7 calcineurin B-like protein 7 (.1) AT4G33000 236 / 8e-79 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT1G64480 216 / 2e-71 CBL8 calcineurin B-like protein 8 (.1) AT4G01420 183 / 1e-58 CBL5 calcineurin B-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039098 [exp] 423 / 1e-148 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10011028 [exp] 254 / 1e-86 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10022407 [exp] 252 / 1e-85 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 250 / 6e-85 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10001816 [exp] 228 / 3e-76 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 228 / 5e-76 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10037648 [exp] 226 / 6e-75 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10015630 [exp] 224 / 3e-74 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10030252 [exp] 213 / 2e-70 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G003500 [exp] 402 / 1e-144 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 390 / 3e-140 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.001G371700 [exp] 372 / 5e-133 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 364 / 9e-130 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.012G015100 [exp] 255 / 9e-87 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.003G084200 [exp] 249 / 2e-84 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 247 / 1e-83 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.015G013100 [exp] 246 / 2e-83 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 238 / 5e-80 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.006G230200 [exp] 234 / 5e-78 AT4G33000 271 / 4e-92 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038764 pacid=23150685 polypeptide=Lus10038764 locus=Lus10038764.g ID=Lus10038764.BGIv1.0 annot-version=v1.0 ATGGAGCAGTTCCTAGGGGGGATGAAGCATTTGTGTGCAGCAATTGCAAATTGTTGTGATGCTGATTTGTATAAGCAACTCAGGGGCTTGCAAGATCCAG AAGCTCTTGCAAGAGAAACAGTGTTTAGCGTGAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATTAGCAGTGCAGTAATTGACGATGGGCTGAT CAACAAGGAAGAATTTCAACTAGCATTGTTTAAAACAAATAAGAAGGAGAGCTTATTTGCAGATCGGGTATTTGATTTGTTTGACTCGAAGCATAATGGT GTGCTTGGTTTTGAAGAGTTTGCACATGCCTTGTCAGTCTTCCACCCTAATGCACCTATTGATGATAAGATTGAATTTTCATTCCAGTTGTATGATCTCA AACAGCAAGGATTCATTGAGAGACAGGAGGTGAAGCAAATGGTAGTGGCGACACTTGCTGAATCCGGTATGAATTTGTCAGATGATGTAATTGAGAGCAT CATTGACAAGACATTCGAGGAGGCGGATACCAAGCATGATGGCAAAATCGACAAAGAAGAATGGCGAAGTCTGGTTTTGAGGCATCCTTCACTGTTGAAG AATATGACCCTCCAATATCTGAAGTAA
AA sequence Show only first row Show all	>Lus10038764 pacid=23150685 polypeptide=Lus10038764 locus=Lus10038764.g ID=Lus10038764.BGIv1.0 annot-version=v1.0 MEQFLGGMKHLCAAIANCCDADLYKQLRGLQDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDSKHNG VLGFEEFAHALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK NMTLQYLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10038764 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	3.0	0.7595
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10042136 [exp]	3.5	0.7329
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10042942 [exp]	4.5	0.7516
AT4G16444			unknown protein		Lus10035992 [exp]	11.0	0.7370
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10007071 [exp]	11.7	0.7411
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	13.4	0.7344
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	15.0	0.7147
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	23.2	0.7066
					Lus10028745 [exp]	31.9	0.6505
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	36.1	0.6883

Compare expression of checked genes

Lus10038764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.