Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16760 350 / 5e-121 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT4G08170 249 / 7e-81 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 225 / 4e-71 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT2G43980 82 / 5e-17 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039098 [exp] 622 / 0 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10035811 [exp] 387 / 8e-136 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035662 [exp] 248 / 1e-80 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 236 / 7e-76 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 230 / 3e-73 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 181 / 2e-55 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 159 / 9e-47 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 76 / 4e-15 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10006145 [exp] 75 / 5e-15 AT2G43980 317 / 1e-105 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G047200 [exp] 372 / 1e-129 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.001G140000 [exp] 332 / 2e-113 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 331 / 5e-113 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.005G149800 [exp] 259 / 7e-85 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 233 / 1e-74 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.017G007500 [exp] 80 / 2e-16 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10038765 pacid=23150320 polypeptide=Lus10038765 locus=Lus10038765.g ID=Lus10038765.BGIv1.0 annot-version=v1.0 ATGGCGAAACGATACAGAGTGGGATTCGCCCTCGCTTCCAAGAAGGTCGGCAGCTTCCTCCAGCCATCCCTCATCGACTACGCCGCCGCCCGCGGCCTCG ATCTCGTATCTATCGACTCATCAAAGCCCTTATCCGAACAGGGTCATCTCGATTGCCTCATCCACAAGTTCTACGACGACGATTGGAAGCTCCAACTCCA ATCCTTCGCCGCCCAAAACCCCAACTCCCCGATCGTTGATCCCATCGACGCCGTTGAGAAGCTCCACAACAGGATCTCCATGCTCCAGGTCGTCAGCAAC CTCAAGCTCGATCCTAATCGATCGGAGCGAGTGGACATTCCCAGACAGGTCGTCGTCGACTCCGATTCCGACGGATCGAAGGCTACCCAAGGTTTGGTTA AGGAATTGGGGTTTCCTTTAATCGCCAAGCCTTTGCTGGCTAACGGATCCATTCTCTCCCACAAGATGTGTCTGATTTTCGACGGGGAAGGGTTGAAGGA GGTGGAAGGAACTCCGATCGTGCTACAGGAGTTTGTGAACCACGGCGGGGTCATATTCAAAGTGTACGTCGCCGGGAACCATGTTCAGTGCGTAAAGAGG AAGTCTTTGTCTGACATTTCGGAGGAGAAATTGAAAAGTCTGAAGGGCACTATGCCGTTTGCTCAGGTCTCCAATCTCGCCGACGGCGGAGATGGCCACG GCGGGAGTGAATTCGCCGACGTGGAGATGCCACCGGAAGGGTTTGCAGAAGAGGTTGGCCGTGGGTTGAAGGAAGGAATGGGGCTTAACTTGTTCAACTT TGATATGATTAGAGATGCCGGAGATGGGAATAGGTATCTGGTTATTGATATTAACTACTTCCCTGGGTATGCTAAGATGCCTAACTACGAGGCTGTGTTG ACGAATTTCATCTTAGAGCTCCTGCAACAGAAGAAAGGAGAGTGA
AA sequence Show only first row Show all	>Lus10038765 pacid=23150320 polypeptide=Lus10038765 locus=Lus10038765.g ID=Lus10038765.BGIv1.0 annot-version=v1.0 MAKRYRVGFALASKKVGSFLQPSLIDYAAARGLDLVSIDSSKPLSEQGHLDCLIHKFYDDDWKLQLQSFAAQNPNSPIVDPIDAVEKLHNRISMLQVVSN LKLDPNRSERVDIPRQVVVDSDSDGSKATQGLVKELGFPLIAKPLLANGSILSHKMCLIFDGEGLKEVEGTPIVLQEFVNHGGVIFKVYVAGNHVQCVKR KSLSDISEEKLKSLKGTMPFAQVSNLADGGDGHGGSEFADVEMPPEGFAEEVGRGLKEGMGLNLFNFDMIRDAGDGNRYLVIDINYFPGYAKMPNYEAVL TNFILELLQQKKGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	0	1
AT3G22070			proline-rich family protein (....		Lus10039700 [exp]	1.0	0.9187
AT1G16340		ATKDSA2, ATKSDA	Aldolase superfamily protein (...		Lus10009596 [exp]	5.3	0.8930
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	6.2	0.8884
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	7.6	0.9144
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	8.1	0.8898
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	8.7	0.8990
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	10.2	0.9086
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	10.6	0.8854
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	11.1	0.9036
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	12.2	0.8674

Compare expression of checked genes

Lus10038765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.