Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15950 132 / 2e-38 RDM2, NRPE4, NRPD4 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) AT5G09920 88 / 6e-22 NRPB4, ATRPB15.9, RPB15.9.9, RPB15.9 RNA polymerase II, Rpb4, core protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039097 [exp] 253 / 4e-86 AT4G15950 124 / 7e-36 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) Lus10005796 [exp] 79 / 3e-18 AT5G09920 243 / 6e-84 RNA polymerase II, Rpb4, core protein (.1) Lus10006805 [exp] 80 / 3e-17 AT5G64813 500 / 4e-177 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G003200 [exp] 179 / 4e-57 AT4G15950 150 / 4e-46 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) Potri.005G084900 [exp] 90 / 9e-23 AT5G09920 269 / 1e-94 RNA polymerase II, Rpb4, core protein (.1) Potri.007G080400 [exp] 90 / 9e-23 AT5G09920 269 / 1e-94 RNA polymerase II, Rpb4, core protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF03874 [flax] [poplar] RNA_pol_Rpb4 RNA polymerase Rpb4
Representative CDS sequence Show only first row Show all	>Lus10038766 pacid=23150443 polypeptide=Lus10038766 locus=Lus10038766.g ID=Lus10038766.BGIv1.0 annot-version=v1.0 ATGTGCTGGAATTGCATTGCCAGTTTGGAAACCCTTGTTTATAGCCAGTTTGGATCAACTTGCTCGATGTCTCTAAAACACATTGTTTTCTTGTATACCC TAGGCAAAGAGGATTCTTCCTCTCCAAGGCCAAAGGGGTCAAGGAAGGTTCAGTTTGATAATGAAGACTCTCCTGAACAGGGGTTTGATTTTTCATCCAA GTTGAATGGGAAGGCTTCAGCGGAGAAAGGTGGCAAAGGAAGCACATCAGTGAAGGGGAAGGCCTCCAAGTCGAAAGAAGGCCCACCACTTGAGCTTAGG ATAGAGCAGGAACTTCTGAAGAATGCTACTTGCATAATGGACTGTGAGGCTGCAGAAATCTTGCAAGGAGTGCAGGACCAGATGATTCTACTATCCCGAG ATCCGACCATCAAACTGCCCGTTTCATTTGACAGAGGGCTGATGTACGCTCAGGCTAATGCTCGTTACAAAGATCACCACTCTGTCAGACGTGTTCTAGA GACCCTCAAAATGTATGGCGTTCTGGAAGGAGAGTTAAGCGTTATCGGCAATGTCTGCCCAGAGAGTGCTGAAGAAGTCTTTGGTCTAGTCCCTTCACTG AAGTCCAAGAAAAGCACACTGACAGAACCACTGGAGGTAGCATTGAAGGAGCTAGCTGAGCTTCGACAATTGGATTAG
AA sequence Show only first row Show all	>Lus10038766 pacid=23150443 polypeptide=Lus10038766 locus=Lus10038766.g ID=Lus10038766.BGIv1.0 annot-version=v1.0 MCWNCIASLETLVYSQFGSTCSMSLKHIVFLYTLGKEDSSSPRPKGSRKVQFDNEDSPEQGFDFSSKLNGKASAEKGGKGSTSVKGKASKSKEGPPLELR IEQELLKNATCIMDCEAAEILQGVQDQMILLSRDPTIKLPVSFDRGLMYAQANARYKDHHSVRRVLETLKMYGVLEGELSVIGNVCPESAEEVFGLVPSL KSKKSTLTEPLEVALKELAELRQLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	0	1
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	1.7	0.9088
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	2.4	0.9046
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	3.5	0.8737
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	3.5	0.9079
AT1G06980			unknown protein		Lus10006211 [exp]	4.0	0.9030
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	5.5	0.8959
AT3G09860			unknown protein		Lus10001400 [exp]	5.7	0.8850
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	7.7	0.8859
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	8.2	0.8681
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	10.4	0.8590

Compare expression of checked genes

Lus10038766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.