Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13300 506 / 4e-167 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13290 500 / 2e-164 VCR varicose-related (.1) AT4G04940 44 / 0.0002 transducin family protein / WD-40 repeat family protein (.1) AT1G61210 43 / 0.0005 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 42 / 0.0009 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039116 [exp] 771 / 0 AT3G13290 1233 / 0.0 varicose-related (.1) Lus10038742 [exp] 497 / 7e-163 AT3G13300 733 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039096 [exp] 248 / 7e-78 AT3G13290 131 / 2e-33 varicose-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002100 [exp] 644 / 0 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G001400 [exp] 629 / 0 AT3G13290 1170 / 0.0 varicose-related (.1) Potri.001G469500 [exp] 503 / 4e-165 AT3G13300 1236 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G166400 [exp] 482 / 2e-157 AT3G13300 1203 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 44 / 0.0002 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019833 [exp] 44 / 0.0002 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038767 pacid=23150547 polypeptide=Lus10038767 locus=Lus10038767.g ID=Lus10038767.BGIv1.0 annot-version=v1.0 ATGAACATGAACATGAACCTAGCGTCCCCAACCAAGCTTCCCAAGGGTCGCCACCTGTTCGGCAGTCAAGTCGTGTACGATATACACACGAGGATCCAAG GTGAGGTGCAGCCTCAACTTGTATCTACACCCATTACTAAGTATTGCTCGGATCCTGTCTTTGTGCTTGGCCTGCGGATTGCAGTTAACAGGAACTATAC TTGCTACGGTCTGAACCCTGGCCCAATCCGCCTTCTCAACATCAGTAATGGCTTAAGAACCTTGCTAAGGGGTCACAATCAGAAAGTGACAGACATGGCC TTCTTTGCTGAAGATGTTCACTCACTCGCCAGTGTATGTGCTGAGGGCCGGGTTTTCATTTGGAAGATCGACGGGGGTCTTGATGAACACGAAAAGCCTA CAATATTTGCACGGATTACCCCCGCACTTGATATAGTTGGTGATGGAGAACCTGTTCATCCCTGTCTTTGCTGGCATCCTCACAAACAAGAAATCCTGAT GGTGGCGATTGGAAATAGTGTACTGAAGATTGACACTATTAAAGTAGGGAAAAATGGCGGGTTTTCGGGAGAGAAACCTTTAAGCTGTTCCATAAATAAC TTGATTGATGGAGTGCAACTTGTTGGTAAGCATGACGGTGAAGTTACTGGACTGTCAATGTGCCAGTGGATGACTACCGGTTTGGCTTCAGCTTCAAGTG ATGGAAAGGTCAAAATTTGGGATGATCGCAAGGCAGTACCGATTTCGATTCTAAGACCACACGATGGTAGACCGGTCAGCTCTGTGTCGTTCTTGACTGC ATCACATCGACCAGATCATATCATCCTTATAACTGGGGGTCCGCTGAATCAAGTTAAGGTATGGGCCTCTTCAAGTGAGGATGGATGGCTGCTACCCAGT GATTCTGAAACATGGAATTGTACCCAGACTTTGACCTTAACGAGTTCTTCCGCCGTATCTTTAGAGGACAGAGACCAAGCTGTAGCCTTGCCTCGAGCCG GTCTGTTTCTACGGGCAAATGCAATATATGCTGTTCACATCGAGTACGGTCCATGTCCAGTTGCAACCCGCATGGATTACATAGCCGAGTTTACTGTTAC AATCCCGATTCTGAGTCTGACCGGAACTAGTGATAGTTTGCTGAACGGCGGACACGTTGTTCAAGTGTACTGTGTTCAGACAACGGCTGTCCAGAAGTAT GCATTGGACTTGTTGCAGTGGTTTCCACCTCCCACCATGGAAAATATTGAGTTGGAGAAGTCAGAATCTAATGCTTCTCGTGCTCTTGATGCTGTAGTGT CTAATGCTTCTGCTGCAACTGATTCGTCTCTTGGAAATAAAACCATCGAGATATCTGCAGTTAGCACAACTTCTGCTCAGCCTCCAATTTCAAGTCCTTT TAATTCCACAGATTCATCGAACCAACCAGGCCGCAGTTCTGGCCCTCATCTTAAATGCTGCTTCCGTCTTCCAGATATCAACCCTGCAAGATACACTTGA
AA sequence Show only first row Show all	>Lus10038767 pacid=23150547 polypeptide=Lus10038767 locus=Lus10038767.g ID=Lus10038767.BGIv1.0 annot-version=v1.0 MNMNMNLASPTKLPKGRHLFGSQVVYDIHTRIQGEVQPQLVSTPITKYCSDPVFVLGLRIAVNRNYTCYGLNPGPIRLLNISNGLRTLLRGHNQKVTDMA FFAEDVHSLASVCAEGRVFIWKIDGGLDEHEKPTIFARITPALDIVGDGEPVHPCLCWHPHKQEILMVAIGNSVLKIDTIKVGKNGGFSGEKPLSCSINN LIDGVQLVGKHDGEVTGLSMCQWMTTGLASASSDGKVKIWDDRKAVPISILRPHDGRPVSSVSFLTASHRPDHIILITGGPLNQVKVWASSSEDGWLLPS DSETWNCTQTLTLTSSSAVSLEDRDQAVALPRAGLFLRANAIYAVHIEYGPCPVATRMDYIAEFTVTIPILSLTGTSDSLLNGGHVVQVYCVQTTAVQKY ALDLLQWFPPPTMENIELEKSESNASRALDAVVSNASAATDSSLGNKTIEISAVSTTSAQPPISSPFNSTDSSNQPGRSSGPHLKCCFRLPDINPARYT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038767 [exp]	0	1
AT4G39420			unknown protein		Lus10030711 [exp]	11.4	0.8599
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	16.9	0.8399
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	19.4	0.8113
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	19.7	0.8484
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	20.5	0.8371
					Lus10022149 [exp]	21.8	0.7604
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	25.5	0.8440
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032140 [exp]	27.1	0.8190
AT1G64625	bHLH	bHLH157	Serine/threonine-protein kinas...		Lus10001527 [exp]	29.9	0.7428
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	31.3	0.8398

Compare expression of checked genes

Lus10038767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.