Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48350 216 / 6e-73 EMB3105 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) AT1G14205 76 / 9e-18 Ribosomal L18p/L5e family protein (.1) AT3G17626 61 / 4e-13 structural constituent of ribosome (.1) AT5G27820 44 / 4e-06 Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039092 [exp] 329 / 1e-117 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Lus10030465 [exp] 75 / 1e-17 AT1G14205 174 / 2e-56 Ribosomal L18p/L5e family protein (.1) Lus10012820 [exp] 72 / 3e-16 AT1G14205 182 / 2e-59 Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005000 [exp] 237 / 3e-81 AT1G48350 229 / 4e-78 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Potri.008G087100 [exp] 73 / 1e-16 AT1G14205 202 / 2e-67 Ribosomal L18p/L5e family protein (.1) Potri.007G100900 [exp] 39 / 0.0004 AT5G27820 155 / 3e-50 Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10038770 pacid=23150567 polypeptide=Lus10038770 locus=Lus10038770.g ID=Lus10038770.BGIv1.0 annot-version=v1.0 ATGGCTACTTGTTCCTTCTCCACCAACTTTGTGGGCTTCAGCCACACTCAGCTCTCGGCGGCTGTCGCGGGGAAGCCACGCTTGAGCTCAATTGCTCTCC CCACCCGACTGACAGTTGAAGCCAAAACCAGAACCAGAGGAGACGACAGGACCGCTCGCCATATTCGAATCAGGAAGAAGGTTGAAGGCACTACAGAGCG GCCGAGGTTGTCTGTCTTCCGTTCAAACAAGCATTTCTACGTCCAGGTGATCGATGACTCCAAGATGCACACTCTCGCTGCTGCTTCCACAATGCAGAAG GTGATGGCGGAGGAGCTCAATTTCACTGCCGGCCCTACCATTGAAGTAGCAAAGAAGGTAGGTGAAACTATAGCGAAGGCATGCTTGGAGAAAGGGATAA CGAAAGTGGCCTTCGACAGAGGAGGGTATCCGTACCATGGTCGAGTAAAAGCTCTTGCTGATGCAGCTCGGGAGAACGGGCTTCAGTTCTAA
AA sequence Show only first row Show all	>Lus10038770 pacid=23150567 polypeptide=Lus10038770 locus=Lus10038770.g ID=Lus10038770.BGIv1.0 annot-version=v1.0 MATCSFSTNFVGFSHTQLSAAVAGKPRLSSIALPTRLTVEAKTRTRGDDRTARHIRIRKKVEGTTERPRLSVFRSNKHFYVQVIDDSKMHTLAAASTMQK VMAEELNFTAGPTIEVAKKVGETIAKACLEKGITKVAFDRGGYPYHGRVKALADAARENGLQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	0	1
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	1.4	0.9824
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	1.4	0.9836
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	1.7	0.9814
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	2.6	0.9750
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	3.0	0.9728
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10028194 [exp]	3.6	0.9676
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	3.9	0.9766
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	4.0	0.9774
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	4.2	0.9752
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	4.9	0.9732

Compare expression of checked genes

Lus10038770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.