Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06980 593 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT4G09730 175 / 2e-46 RH39 RH39 (.1) AT1G31970 130 / 1e-31 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 127 / 8e-31 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G14610 127 / 2e-30 DEAD box RNA helicase family protein (.1.2) AT4G00660 125 / 4e-30 ATRH8 RNAhelicase-like 8 (.1.2) AT3G01540 124 / 2e-29 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G45810 122 / 3e-29 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 121 / 7e-29 DEA(D/H)-box RNA helicase family protein (.1) AT3G06480 120 / 1e-27 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039091 [exp] 1124 / 0 AT3G06980 654 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10011780 [exp] 232 / 1e-68 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2) Lus10017781 [exp] 157 / 6e-40 AT4G09730 732 / 0.0 RH39 (.1) Lus10032135 [exp] 130 / 2e-31 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 127 / 2e-30 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10015627 [exp] 125 / 3e-30 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 125 / 4e-30 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10017804 [exp] 124 / 1e-29 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 122 / 3e-29 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004700 [exp] 626 / 0 AT3G06980 635 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G198300 [exp] 158 / 1e-40 AT4G09730 743 / 0.0 RH39 (.1) Potri.013G158000 [exp] 134 / 1e-32 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 133 / 1e-32 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.014G081100 [exp] 125 / 4e-30 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.003G098800 [exp] 124 / 2e-29 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.002G157500 [exp] 122 / 3e-29 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.017G071400 [exp] 121 / 3e-28 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 119 / 5e-28 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G000100 [exp] 119 / 1e-27 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10038771 pacid=23150449 polypeptide=Lus10038771 locus=Lus10038771.g ID=Lus10038771.BGIv1.0 annot-version=v1.0 ATGGCGGCTAGAGTTACTCATTTCACTCAATATTCTTCACCGCTCAGCACGAGCATCGGCCCAACAACTTCTCACTGCCGCAGTAGCTGCGTTATCATTA TCTTGAAGCGACCTAGCCATAGCGGCAGCCGCCGTCTTACTTCTCTTCAAGCTTCCACTTCTTCATCTTCATCTCCACGATTTCAGTCGCGTGCCTCTCG TGCACCAGTCCACGCAACCGACGACCGGGACTCGGATAACGAATTCCGTCCTCCGCCAGGTTGGCCACACTTTCCTTTATACCCCAATTTCGTCTCTTTA TCTATTAGTTTGAGCTCTAAAATCTTCCATGGCTGGTATCGGGACCGCAAAATGTTGAGTAGTGGTCATGAATTGAACTTGCTGTTTCTTCCAGGCATTC AAAGGTCAGCAACGATTCGCACCAAGGGACAATATGTGAATTCATCGAAGCTGACATCTCTAAGGTCGAGAATCCTTAGCAGGGATGCTTCTTCAACAGT GGAAAAGAATGTGGAGAAACAGGAGGAGGAGGAGGAGGAGCCAGCTTCCAGATCATCAGCAAGTAGACGTAAAGAAAAGTCGTTAGATGCCCCAAACAGG AGAAGAGTTCCCAGGGGGAAAGGTCCCGGTTACGAGAGGCTTGATCGGCGAGATATAGAGGAAACGAGGAGCTTCAGGAATGATGAACGAGATGATAACG TTCAACGGAGATCCAAGTTTCAAAGTACGTCCTATGATAACCCTCCAAGGTCCAATTTCAAAAGGTTTGTTCCAGAATCCACGCGTGCCCGAGGCTATAC TGCTTCAAGCTCGAGGAGGTGGGGCGATGAAGGCTCTGTTGGTAGCTTCAGACCCAGGTCACATTTCCCTCCTCAAAGTGAAAGGCAATATAAACCTTCT CCGGGGGATGATTTCTTCAGTAGGAAATCCTTCAAAGACGTGGGATGCAAAGAATATATTGTTGATGCTTTGAAAGCACAGCTTTTTCAGCGTCCTTCCC AGATTCAGGCCATGGCATTTGCTCCTGTGATGGAAGGGAAAACCTGTGTCATAGCCGATCAAAGTGGATCAGGGAAAACCCTGGCATATCTTATCCCTGC AATTCAGCGTATTAAGGAGGAGGAAGCACAAACTGTTGGTGGATCTGCAGCTCGAAAAAGTCCTCAAGTATTCATAATGGTGCCAACCGCTGAGTTGGCT TCTCAGTATGTCTCCAATTCCGGGTCTCAGGTTCTGAACAATTGTCGATTAATTTCAAAGTCCGGGGTTCCATTTCGATCCATGGTTGCAACAGGGGGAT TTCGGCAGAAAACTCAATTGGAAACTCTAGAGCAAGGTGTTGATGTGCTGATAGCAACACCTGGTCGTTTCCTTTTCCTGATTAAACAAGGAGTCTTGAA ACTAGAAGATCTTAGATGCGCTGTTCTGGACGAGATAGATATACTGTTTAAGGATGAGGATTTTGAAGCTGCTCTCCAGCTCTTGATAAATTCTTCGCCT ATTACTGCACAATATCTATTCGTGACGGCAACTTTACCAGTAGATGTGTACAACAAGCTTGTGGAGATGTTCCCTGATTGTACGATGATCATGGGTCCAA GCATGCACAGAACAAGCGTGGGGCTTGAAGAGGTACTAGTCGATTGCAGTGGAGATATTGGGGCCGAAAAAACTCCAGAGACAGCATTTGAGAATAAGAA ATCTGCTTTGCTACAACTCGCAGAACAGACTCCCGTCTCCAAGACAATTATTTTCTGCAACAAGATTGAGACGTGCAGAAAAGTTGAAAATGTATTAACA CGGTTTGATAGAAAAGGAGTTCAGGCCCGAGTCCTCCCGTTCCATGCTGCTCTGGCTCAAGAATCACGGGCTGCAAATATGAAAGAATTCATGAAACAAA ATCATTCCACAGAACAGTCTCTTTTCCTGGTTTGTACGGATAGAGCATCGCGCGGAATCGACTTTGCTGGTGTGGATCACGTTGTGCTGTTCGACTTCCC TCGAGATCCGAGCGAATACGTGCGGAGGGTGGGAAGAACCGCGAGAGGTGCTGGAGGGAAAGGGAAGGCGTTTGCGTTTGTGGTAGGGAAGCAAGTTTCT CTGGCACGGAAGATAATAGACCGCAACCAGAAAGGACATCCGTTGCATGATGTGCCAGCAGCTTATGAGCTGATGCCTTGA
AA sequence Show only first row Show all	>Lus10038771 pacid=23150449 polypeptide=Lus10038771 locus=Lus10038771.g ID=Lus10038771.BGIv1.0 annot-version=v1.0 MAARVTHFTQYSSPLSTSIGPTTSHCRSSCVIIILKRPSHSGSRRLTSLQASTSSSSSPRFQSRASRAPVHATDDRDSDNEFRPPPGWPHFPLYPNFVSL SISLSSKIFHGWYRDRKMLSSGHELNLLFLPGIQRSATIRTKGQYVNSSKLTSLRSRILSRDASSTVEKNVEKQEEEEEEPASRSSASRRKEKSLDAPNR RRVPRGKGPGYERLDRRDIEETRSFRNDERDDNVQRRSKFQSTSYDNPPRSNFKRFVPESTRARGYTASSSRRWGDEGSVGSFRPRSHFPPQSERQYKPS PGDDFFSRKSFKDVGCKEYIVDALKAQLFQRPSQIQAMAFAPVMEGKTCVIADQSGSGKTLAYLIPAIQRIKEEEAQTVGGSAARKSPQVFIMVPTAELA SQYVSNSGSQVLNNCRLISKSGVPFRSMVATGGFRQKTQLETLEQGVDVLIATPGRFLFLIKQGVLKLEDLRCAVLDEIDILFKDEDFEAALQLLINSSP ITAQYLFVTATLPVDVYNKLVEMFPDCTMIMGPSMHRTSVGLEEVLVDCSGDIGAEKTPETAFENKKSALLQLAEQTPVSKTIIFCNKIETCRKVENVLT RFDRKGVQARVLPFHAALAQESRAANMKEFMKQNHSTEQSLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFAFVVGKQVS LARKIIDRNQKGHPLHDVPAAYELMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10038771 [exp]	0	1
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10013294 [exp]	1.4	0.9488
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	4.2	0.9457
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	8.1	0.9405
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	9.5	0.9372
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	9.6	0.9377
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	10.1	0.9367
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	10.8	0.9261
AT3G19810			Protein of unknown function (D...		Lus10017411 [exp]	11.1	0.8381
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	12.3	0.9271
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	12.5	0.9194

Compare expression of checked genes

Lus10038771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.