Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 787 / 0 ATSBT5.4 Subtilase family protein (.1) AT2G04160 758 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 553 / 0 ARA12 Subtilase family protein (.1) AT4G34980 528 / 1e-177 SLP2 subtilisin-like serine protease 2 (.1) AT5G45650 521 / 2e-174 subtilase family protein (.1) AT3G14067 518 / 1e-173 Subtilase family protein (.1) AT2G05920 516 / 5e-173 Subtilase family protein (.1) AT1G20160 509 / 1e-170 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT3G14240 501 / 6e-167 Subtilase family protein (.1) AT1G04110 492 / 1e-163 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039087 [exp] 1211 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 1193 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 1188 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 1171 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10016064 [exp] 747 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 682 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 676 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 641 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10007083 [exp] 574 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001600 [exp] 805 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 804 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 800 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 792 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 743 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 737 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 734 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 730 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.005G067200 [exp] 713 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468900 [exp] 708 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10038772 pacid=23150312 polypeptide=Lus10038772 locus=Lus10038772.g ID=Lus10038772.BGIv1.0 annot-version=v1.0 ATGGGGTTCAGAAGATACGGTCTTGTTCATGTTCTGTTAGTGTCATGCTTGTTCCAGACACTAGCCTTTGGTGCAGAGAAGAACTACATAGTGTACTTGG GATCCCATTCACATGGAGGCCTCTCCACACTCTCCAATCCTGATGCTACTGTTCAAGCCGTCACTCAATCTCACTACAATCTCCTTGGATCAGTCCTAGG AAGTCAGAAAGCCAGAGGTGCAATGGGATACTCATACACATGGAACATCAATGGCTTCTCTGCCAAGCTTGAGGAGGAAGAAGCTGCTGAAATTGCCAAT CATCCGGGAGTGGTTTCGGTGTTCTTGGATCGAGCGCGAAAGCTGCAGACGACAAGATCATGGGACTATATGGGACTTGAGAGCCATGGTGCAGAATCCA GCCCTGGACCTTTGTGGAAGGCAGCGAATTACGGGGAAGGAACAATCATAGCGAATATAGATACTGGGGTTTGGCCTGAATCGAAGAGCTTCGACGATGA AGGTTATGGTCCTGTGCCTTCCAAGTGGAAGGGCATCTGCCAGAATAACACCAAGGCTGGAGTTCCTTGTAACAGGAAGTTGATAGGTGCAAGATACTTC AGCAAAGGTTTCGTCAGCTTTGGAGGCAAACCAGAGGACTCTTTCGCCTCAGCTCGAGACGCTCAAGGCCATGGAACTCACACATTATCAACAGCGGCAG GCAACTTCGTCCCCAATGTTAACTTCCTCAACACCACCTCGGGGACCGCGAAAGGAGGCTCCCCTAAGGCCAGAGTCGCGGCTTACAAAGTCTGTTGGCC CCCGAATGATGACTGCTACGACTCCGACATCCTGGCTGCATTCGACACTGCGATCAATGATGGTGTGGATGTCATCTCCGTGTCCCTTGGTGGTAATGCT GCCGATTACTCTGAGGATACGATCGCCATCGGCTCTTTCCACGCCATGCAGAAGGGTATTGCGGTTTCTTGCTCCGCAGGTAACTCCGGTCCTAGCCACG GAACTGTGTCCAACGTTGCACCTTGGATCACAACTGTTGCGGCAAGTACCTTGGATAGGAAGTTTACAGCTTTTGTTCAGCTTCATGGTGGCTTGCGCAT TCAGGGAGAAACACTTTACGGATCTCTGGAAGGAAACAAGACCTATCCACTCCGCCTTGCATCTGAAGTTAGGGCTGCCAATGTACCTATCGAAGACGCC CTTTCGTGCGAACCCGAGACATTGGATCCAGTGAAGGCAAGAGGCAAGATCTTGGTTTGCTTGAGTGGACCAAATCTAATAATCGAAAAGGAAGCGGCTT CGGCAGGAGCAGTAGGGATGATCTTCTGCAATGATAAGCTGTTTGACGATGCGCTCCCGGCTCATTTCCTGCCTGCTCTTCATATCACCTACAAAGACAG ACTTTCTCTTTTCAACTACATCAACTCCACCAAAAATCCTCAGGCATACATTTCTTCAGCGACACCAGAGAACACTGTCAAGCCTGCTCCAGTCATGGCA TCCTTCTCCTCTGTTGGACCAAATTCCATCACACCTCAGATTCTCAAGCCTGATATTACTGCTCCAGGAGTGAACATCCTTGCAGCCTATAGTGAAGCAA AAAAACCAGAGAAAGACATTGACCCTCGCAACTTCCCTTTCTACTTTGAATCAGGAACATCAATGTCTTGCCCACATGTCGCCGGAGTTTTCGGCCTCCT TAGAACCGTCTATCCTAACTGGAGCCCTGCAGCTATTCGCTCTGCAATCATGACCACAGCGAGAACAATGGACAATACTGGGCACCAAATCCGGAATTCT GTAATGGAGAGAGCCACACCGTTCAACTACGGATCGGGCCACATCATGCCGAACGAAGCGATGAATCCCGGCCTAGTCTACGACTTAACCGAGACTGACT ACTTGAACTTCCTATGTGCAAGTGGCTACAACAAGACACTCTTGATGCTTTTCGCGGAGTCTCCTTACAAGTGTCCTGAACCTGCTGTGAGCAGCCTCGA CCTCAACTACCCTTCGATCGCGGTCCCTAAGCTCCCCTCGACAGGTTCGATTACCGTGATTAGGAAGCTGAAGAATGTGGGGAAGCCAGGCAAGTACACT GTGTCGGTTAAGGAACCGACAGGGGTTTCGGTTTCGGTGAAGCCTAGTGTCCTGACGTTTGATAAGGAGGGGGAAGAGAAGGAGTTCAAGGTGATTCTGA AGGCCAAGTGGGGTGGTAAGGGCCAGGGGAATGGTTATGTGTTTGGAGGAATTACATGGACAGATGGTGTCCATTATGTAAGCAGTCCTGTTGCTGTTTC TCCTGCTTAG
AA sequence Show only first row Show all	>Lus10038772 pacid=23150312 polypeptide=Lus10038772 locus=Lus10038772.g ID=Lus10038772.BGIv1.0 annot-version=v1.0 MGFRRYGLVHVLLVSCLFQTLAFGAEKNYIVYLGSHSHGGLSTLSNPDATVQAVTQSHYNLLGSVLGSQKARGAMGYSYTWNINGFSAKLEEEEAAEIAN HPGVVSVFLDRARKLQTTRSWDYMGLESHGAESSPGPLWKAANYGEGTIIANIDTGVWPESKSFDDEGYGPVPSKWKGICQNNTKAGVPCNRKLIGARYF SKGFVSFGGKPEDSFASARDAQGHGTHTLSTAAGNFVPNVNFLNTTSGTAKGGSPKARVAAYKVCWPPNDDCYDSDILAAFDTAINDGVDVISVSLGGNA ADYSEDTIAIGSFHAMQKGIAVSCSAGNSGPSHGTVSNVAPWITTVAASTLDRKFTAFVQLHGGLRIQGETLYGSLEGNKTYPLRLASEVRAANVPIEDA LSCEPETLDPVKARGKILVCLSGPNLIIEKEAASAGAVGMIFCNDKLFDDALPAHFLPALHITYKDRLSLFNYINSTKNPQAYISSATPENTVKPAPVMA SFSSVGPNSITPQILKPDITAPGVNILAAYSEAKKPEKDIDPRNFPFYFESGTSMSCPHVAGVFGLLRTVYPNWSPAAIRSAIMTTARTMDNTGHQIRNS VMERATPFNYGSGHIMPNEAMNPGLVYDLTETDYLNFLCASGYNKTLLMLFAESPYKCPEPAVSSLDLNYPSIAVPKLPSTGSITVIRKLKNVGKPGKYT VSVKEPTGVSVSVKPSVLTFDKEGEEKEFKVILKAKWGGKGQGNGYVFGGITWTDGVHYVSSPVAVSPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10038772 [exp]	0	1

Compare expression of checked genes

Lus10038772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.