Plant FIBer expression Database

Lus10038773 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59810 255 / 8e-80 ATSBT5.4 Subtilase family protein (.1)
AT2G04160 234 / 5e-72 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
AT5G67360 192 / 2e-56 ARA12 Subtilase family protein (.1)
AT2G05920 184 / 3e-53 Subtilase family protein (.1)
AT5G45650 182 / 1e-52 subtilase family protein (.1)
AT4G34980 177 / 7e-51 SLP2 subtilisin-like serine protease 2 (.1)
AT5G51750 169 / 6e-48 ATSBT1.3 subtilase 1.3 (.1)
AT3G14067 165 / 1e-46 Subtilase family protein (.1)
AT1G04110 164 / 5e-46 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
AT3G14240 157 / 1e-43 Subtilase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039086
[exp]
470 / 5e-163 AT5G59810 850 / 0.0 Subtilase family protein (.1)
Lus10038774
[exp]
370 / 9e-124 AT5G59810 839 / 0.0 Subtilase family protein (.1)
Lus10039085
[exp]
364 / 2e-121 AT5G59810 827 / 0.0 Subtilase family protein (.1)
Lus10039087
[exp]
362 / 8e-121 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10038772
[exp]
332 / 2e-109 AT5G59810 815 / 0.0 Subtilase family protein (.1)
Lus10016064
[exp]
239 / 3e-73 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10007083
[exp]
198 / 3e-58 AT5G45650 956 / 0.0 subtilase family protein (.1)
Lus10020458
[exp]
196 / 2e-57 AT5G45650 940 / 0.0 subtilase family protein (.1)
Lus10034900
[exp]
191 / 5e-56 AT2G05920 1107 / 0.0 Subtilase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G171600
[exp]
269 / 3e-85 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.006G001600
[exp]
262 / 2e-82 AT5G59810 970 / 0.0 Subtilase family protein (.1)
Potri.011G165900
[exp]
248 / 4e-77 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.001G468800
[exp]
245 / 6e-76 AT5G59810 939 / 0.0 Subtilase family protein (.1)
Potri.001G469000
[exp]
228 / 2e-69 AT5G59810 754 / 0.0 Subtilase family protein (.1)
Potri.001G468900
[exp]
221 / 7e-67 AT5G59810 730 / 0.0 Subtilase family protein (.1)
Potri.011G076700
[exp]
196 / 7e-58 AT5G45650 970 / 0.0 subtilase family protein (.1)
Potri.011G050100
[exp]
194 / 3e-57 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.011G050300
[exp]
194 / 7e-57 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.011G050000
[exp]
191 / 7e-56 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00082 Peptidase_S8 Subtilase family
CL0364 Leu-IlvD PF02225 PA PA domain
Representative CDS sequence
>Lus10038773 pacid=23150680 polypeptide=Lus10038773 locus=Lus10038773.g ID=Lus10038773.BGIv1.0 annot-version=v1.0
ATGGATGAGAAGTTTGAAGCTTTTGTTCATCTTCAGGATGGCTTAAGCATTGAGGGAGAAACTCTTACCGGATCTTCGGGCAAAAAGAAGACCTATCCAC
TCCGCCTTGTATCGCAAGTTAGGGCTGCCAACATATCTATCAGCGACGCCCTTTTCTGCAAACCAAACACATTGGATCCAGAGAAGGCAAAAGGCAAGAT
CTTGGTTTGTTTGAGGGGCGTATCTGGAAGACTGGAAATGGGACAACTATTGGCTTCTGCAGGTGCAGCTGGGATGATCCTCTGCAATGACAAGTTGAGT
GGTGATGAACTCGAGCGTGATCCTCACTACTTCCCTGCTCTTCATATCACCTACAATGATAGCCTTGCCCTTTACAACTACATCAATTCCACCAAAAATC
CTCATGCATACATTTCTCCTCTGACAACTGAGATCCACATCAAGCCTGCTCCAGTCATGGCATCTTTCTCCTCCGCTGGACCAAATGCCATCACGCCTAA
TATACTCAAGACTGAAGCGAAAAAAGATGTTGACCCTCGCAAGATACCTTTCGCCATTATTCAAGGAACATCAATGTCTTGCCCTCATGTCGCCGGAGTT
TTTGGCCTCCTTAGAACTGTCTTTCCAAACTGGAGCCCTGCCGCTATTCGCTCTGCAATTATGACCACAGCAAGAACAAGGGACAATACCGGGAACCCAA
TCCGGGATTATAACATGGAGAGAGCCACACCATTCAAATACGGATGGGGCCACATCAGACGAACAATGCGATGA
AA sequence
>Lus10038773 pacid=23150680 polypeptide=Lus10038773 locus=Lus10038773.g ID=Lus10038773.BGIv1.0 annot-version=v1.0
MDEKFEAFVHLQDGLSIEGETLTGSSGKKKTYPLRLVSQVRAANISISDALFCKPNTLDPEKAKGKILVCLRGVSGRLEMGQLLASAGAAGMILCNDKLS
GDELERDPHYFPALHITYNDSLALYNYINSTKNPHAYISPLTTEIHIKPAPVMASFSSAGPNAITPNILKTEAKKDVDPRKIPFAIIQGTSMSCPHVAGV
FGLLRTVFPNWSPAAIRSAIMTTARTRDNTGNPIRDYNMERATPFKYGWGHIRRTMR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G59810 ATSBT5.4 Subtilase family protein (.1) Lus10038773
[exp]
0 1

Lus10038773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.