Plant FIBer expression Database

Lus10038774 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59810 825 / 0 ATSBT5.4 Subtilase family protein (.1)
AT2G04160 801 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
AT5G67360 593 / 0 ARA12 Subtilase family protein (.1)
AT4G34980 558 / 0 SLP2 subtilisin-like serine protease 2 (.1)
AT5G45650 557 / 0 subtilase family protein (.1)
AT2G05920 546 / 0 Subtilase family protein (.1)
AT3G14240 531 / 1e-178 Subtilase family protein (.1)
AT3G14067 530 / 3e-178 Subtilase family protein (.1)
AT1G20160 518 / 1e-173 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
AT1G04110 514 / 6e-172 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039085
[exp]
1464 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1)
Lus10039086
[exp]
1296 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1)
Lus10039087
[exp]
1283 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10038772
[exp]
1214 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1)
Lus10016064
[exp]
802 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10006505
[exp]
692 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10023048
[exp]
676 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1)
Lus10014591
[exp]
639 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10007083
[exp]
597 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G171600
[exp]
849 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.011G165900
[exp]
848 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.001G468800
[exp]
847 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1)
Potri.006G001600
[exp]
845 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1)
Potri.001G469000
[exp]
774 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1)
Potri.011G050100
[exp]
744 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.011G050000
[exp]
742 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.005G067200
[exp]
740 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.011G050300
[exp]
739 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.001G468900
[exp]
738 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0570 PPP-I PF05922 Inhibitor_I9 Peptidase inhibitor I9
CL0570 PF00082 Peptidase_S8 Subtilase family
CL0364 Leu-IlvD PF02225 PA PA domain
Representative CDS sequence
>Lus10038774 pacid=23150717 polypeptide=Lus10038774 locus=Lus10038774.g ID=Lus10038774.BGIv1.0 annot-version=v1.0
ATGGAGTTCCAAAGATCTGATCTTGTTCACTGTCTGTTAGTGTCATTCCTGTTCCAGACACTAGCCTTCGCTGCACAGAAAAACTACATAGTCTACTTGG
GATCTCATTCACATGGAGGCATCAGTCAACTCTCCAACACTGAAGCTACTGTTCAAGTCGTCACTGAATCTCACTACAATCTCCTCGGATCAGTCCTAGG
AAGTGAGAAAGCCAGAGGTGCACTTGAATACTCATACACATGGAACATCAATGGCTTCTCTGCCAAACTTGAGGAGGAAGAAGCTGCTGAAATTGCCAAA
AATCCGGGAGTGGTCTCGGTGTTCTTGGATCGAGGGAGGAAGCTGCACACGACAAGATCATGGGACTACATGTCACTTGAGAACCATGGTGCAGAAGCCA
GCCCTGGAGCACTGTGGAAAGCAGCCAATTATGGTGAAGGAACAATCATAGCCACATTAGATTCTGGGGTTTGGCCTGAATCGAAGAGCTTCGACGATGA
AGGATACGGTCCAGTACCATCCAAGTGGAAGGGCATCTGTCAGAACGACACCAAGGCTGGAGTCCCCTGTAACAGGAAGTTGATAGGTGCAAGATACTTC
AGCAAAGGTTACGTCAGCGCAGGAGGCAAACCAGAGGACACTTTCGCCTCAGCTCGTGACTATCTTGGCCATGGAACTCACACCTTATCAACAGCAGGGG
GGAACTTCGTTCCTCATGCTAAGATCTTCAACTCCATCGCGGGAACTGCCAAAGGTGGCTCGCCTAAGGCCAGAGTCGCAGCTTACAAGATCTGCTGGCC
AAAAACCGACGACAACTCGTGCTTCGACTCCGACATCTTGGCTGCATTCGACGCTGCGATCAATGATGGTGTGGATGTCATCTCGGTGTCCCTCGGTGGG
GATCCTTACAATTACTTCGAGGATTCGATCGCCATCGGCTCTTTCCATGCTGTCCAGAAGGGTATTGTTGTTGCTTGTTCCGCAGGTAACCAGGGTCCTA
GCCCCAAAACAGTGTCAAACATTGCACCTTGGATCACAACGGTTGCAGCAAGCACCTTGGATAGGAAGTTTACAGCTTTTGTTCAGCTTCAGAATGGCTT
GCGCATTGAGGGGAAAACTCTCTACGGATCTCTGGCCGGAAACAAGACCTATCCACTCCGCCTTGCATCCGAAGTTAGGGCTTCCAACGGATCTATCTAC
GATGCCCTTTTGTGCAAAGCCAACACATTGGATCCAAAGAAGGCAAGAGGAAAGATCTTGGCTTGCTTGATGGGAGGAAATGACGGAGTAAGTAAGTCCC
AAGTGGCGGCTTCGGCAGGTGCAGCTGGGATGATCCTCTGCAATGATAAGTCTTATGGTGATATTCTACAAGCCGATCGTCACTTCCTGCCTGCTGTTCA
TATCAGCTACAAAGATAGCCTTGCTGTTTTCAACTACATCAATTCGACCAAGCACCCTCATGCATACATATCTCCTCTGACACCTCAGATCAATGTCAAG
CCTGCTCCAGTCATGGCATTCTTCTCCTCTGCTGGACCAAATATCATCACACCTCAGATTCTAAAGCCTGATATTACTGCTCCGGGAGTGGACATCTTTG
CAGCCTGGACTGAAGCCAAACATTCAGAAAAAGGCGCTGACCCTCGCAAGTTACCTTTCAACATTGCATCAGGAACATCAATGTCTTGCCCTCATGTCGC
CGGAGTTTTTGGCCTCCTTAGAGCCGTCTATCCTCACTGGAGCCCTGCTGCTATTCGCTCTGCAATCATGACAACAGCAAGAACAAGGGACAATACGGGG
AACCCAATCCAGGATTACTTAATGGAGAGAGCCACACCATTCAGCTACGGATCTGGCCACATCAGGCCGAACCCTGCGATGAATCCCGGCCTAGTGTACG
ACTTAACGGAGACTGACTACTTGAACTTCTTATGTGCAAGCGGCTACAACAAGACCGTACTGAGGCTTGTCACAAACACTCCTTACAAGTGTCCTGAACC
TGCTACAAGCATCCTCGACCTCAACTACCCTTCCATCGCAGTCCCCGCGCTCCCGTCAAAAGGTTCAATTACCGTGACAAGAAAGCTGAAGAATGTGGGG
AAGCCAGGCAAGTATGCTGTCTCGGTTAAAGAAGCGAAAGGGGTTTCGATTTTGGTAAAGCCTGATGTCCTGACGTTCGACAAGGAGGGGGAAGAGAAGG
TGTTTAAGGTGACTCTCAAAGCCAAGAGGGCTGGTAAGGGAACGAATGAGTATGCGTTTGGTGGGATTACATGGACGGATGGTGTCCACCATGTGAGAAG
TCCCATTGCAGTTTCTCATGCTTAG
AA sequence
>Lus10038774 pacid=23150717 polypeptide=Lus10038774 locus=Lus10038774.g ID=Lus10038774.BGIv1.0 annot-version=v1.0
MEFQRSDLVHCLLVSFLFQTLAFAAQKNYIVYLGSHSHGGISQLSNTEATVQVVTESHYNLLGSVLGSEKARGALEYSYTWNINGFSAKLEEEEAAEIAK
NPGVVSVFLDRGRKLHTTRSWDYMSLENHGAEASPGALWKAANYGEGTIIATLDSGVWPESKSFDDEGYGPVPSKWKGICQNDTKAGVPCNRKLIGARYF
SKGYVSAGGKPEDTFASARDYLGHGTHTLSTAGGNFVPHAKIFNSIAGTAKGGSPKARVAAYKICWPKTDDNSCFDSDILAAFDAAINDGVDVISVSLGG
DPYNYFEDSIAIGSFHAVQKGIVVACSAGNQGPSPKTVSNIAPWITTVAASTLDRKFTAFVQLQNGLRIEGKTLYGSLAGNKTYPLRLASEVRASNGSIY
DALLCKANTLDPKKARGKILACLMGGNDGVSKSQVAASAGAAGMILCNDKSYGDILQADRHFLPAVHISYKDSLAVFNYINSTKHPHAYISPLTPQINVK
PAPVMAFFSSAGPNIITPQILKPDITAPGVDIFAAWTEAKHSEKGADPRKLPFNIASGTSMSCPHVAGVFGLLRAVYPHWSPAAIRSAIMTTARTRDNTG
NPIQDYLMERATPFSYGSGHIRPNPAMNPGLVYDLTETDYLNFLCASGYNKTVLRLVTNTPYKCPEPATSILDLNYPSIAVPALPSKGSITVTRKLKNVG
KPGKYAVSVKEAKGVSILVKPDVLTFDKEGEEKVFKVTLKAKRAGKGTNEYAFGGITWTDGVHHVRSPIAVSHA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G59810 ATSBT5.4 Subtilase family protein (.1) Lus10038774
[exp]
0 1

Lus10038774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.