Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74050 309 / 2e-107 Ribosomal protein L6 family protein (.1) AT1G74060 308 / 5e-107 Ribosomal protein L6 family protein (.1) AT1G18540 299 / 1e-103 Ribosomal protein L6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039083 [exp] 344 / 2e-121 AT1G74050 363 / 1e-128 Ribosomal protein L6 family protein (.1) Lus10038776 [exp] 343 / 5e-121 AT1G74050 355 / 2e-125 Ribosomal protein L6 family protein (.1) Lus10039084 [exp] 342 / 2e-120 AT1G74050 356 / 3e-126 Ribosomal protein L6 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065800 [exp] 320 / 8e-112 AT1G74050 304 / 2e-105 Ribosomal protein L6 family protein (.1) Potri.001G271500 [exp] 311 / 2e-108 AT1G74050 288 / 5e-99 Ribosomal protein L6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01159 [flax] [poplar] Ribosomal_L6e Ribosomal protein L6e PF03868 [flax] [poplar] Ribosomal_L6e_N Ribosomal protein L6, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038775 pacid=23150343 polypeptide=Lus10038775 locus=Lus10038775.g ID=Lus10038775.BGIv1.0 annot-version=v1.0 ATGGCGCCAAGGAAGACTCCAAAGGTTAGCAGGAACCCCGACCTGATTAGGGGTGTGGGTAAATACTCCAGATCTCAAATGTACCACAAGCGTGGTTTGT GGGCAATCAAGGCGAAAAATGGCGGTGTTTTCCCCAAGCACGATCCTAAGCCTAAGGTCGCCGCCCCGGCAGAGAAGGCTTCGAAGTTCTACCCTGCTGA TGATGTCAAGGTTCCTCTTCCCAACAGGCGCAAGCCCAAACCCACCAAGCTCAAGGCTAGCATCACCCCAGGAACTATTTTGATCCTCCTTGCTGGAAGG TTCAAAGGAAAGAGAGTTGTGTTCCTGAAGCAGCTTCCATCTGGCTTGCTATTGGTCACTGGGCCATTCAAGATCAATGGGGTTCCTCTGAGGCGTGTGA ACCAAGCATACGTCATTGGTACCTCTACAAAGGTTGACATTTCTGGCGCTAACGTGGATAAGTTTGATGACAAATACTTCGCCAAGGCCGCCGAAAAGAA GAAGAAGAAGAGCGAGGGAGAGTTCTTCGAGGAAGAGAAGGAGGAGAAGAGTGAGCTCCCCCAGGGCAAGAAGGATGACCAGAAGTCTGTTGATGCTGCT TTGCTCAAGACAATTGAGGCTGTGCCAGATTTGAAGTCCTACTTGGGCGCAAGGTTCTCTTTGAAGGCAGGCATGAAGCCCCATGAGCTTGTGTTTTAA
AA sequence Show only first row Show all	>Lus10038775 pacid=23150343 polypeptide=Lus10038775 locus=Lus10038775.g ID=Lus10038775.BGIv1.0 annot-version=v1.0 MAPRKTPKVSRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPKHDPKPKVAAPAEKASKFYPADDVKVPLPNRRKPKPTKLKASITPGTILILLAGR FKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGANVDKFDDKYFAKAAEKKKKKSEGEFFEEEKEEKSELPQGKKDDQKSVDAA LLKTIEAVPDLKSYLGARFSLKAGMKPHELVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	0	1
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	2.0	0.9637
AT5G48760			Ribosomal protein L13 family p...		Lus10016679 [exp]	2.0	0.9628
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	2.4	0.9588
AT2G40510			Ribosomal protein S26e family ...		Lus10030533 [exp]	3.2	0.9531
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	3.5	0.9570
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10004640 [exp]	3.6	0.9198
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	4.2	0.9386
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	5.3	0.9381
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	5.7	0.9226
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	6.0	0.9223

Compare expression of checked genes

Lus10038775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.