Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74050 348 / 9e-123 Ribosomal protein L6 family protein (.1) AT1G74060 347 / 2e-122 Ribosomal protein L6 family protein (.1) AT1G18540 338 / 6e-119 Ribosomal protein L6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039083 [exp] 397 / 4e-142 AT1G74050 363 / 1e-128 Ribosomal protein L6 family protein (.1) Lus10038775 [exp] 393 / 1e-140 AT1G74050 359 / 2e-127 Ribosomal protein L6 family protein (.1) Lus10039084 [exp] 386 / 8e-138 AT1G74050 356 / 3e-126 Ribosomal protein L6 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065800 [exp] 357 / 3e-126 AT1G74050 304 / 2e-105 Ribosomal protein L6 family protein (.1) Potri.001G271500 [exp] 344 / 2e-121 AT1G74050 288 / 5e-99 Ribosomal protein L6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01159 [flax] [poplar] Ribosomal_L6e Ribosomal protein L6e PF03868 [flax] [poplar] Ribosomal_L6e_N Ribosomal protein L6, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038776 pacid=23150439 polypeptide=Lus10038776 locus=Lus10038776.g ID=Lus10038776.BGIv1.0 annot-version=v1.0 ATGGCGCCGAGGAAGACCCCACAAGTTAGCAGGAACCCCGACCTGATCAGGGGTGTGGGTAAATACTCCAGGTCCCAAATGTACCACAAGCGTGGTTTAT GGGCAATCAAGGCTAAGAACGGCGGTTTCTTCCCCAAGCACGATCCCAAACCTAAGGTCGTCGCCCCTGCAGAGAAGGCCTCCAAGTTCTACCCTGCTGA CGATGTCAAAGTTCCTCTTCCCAACAGGCGCAAGCCCAAACCCACCAAGCTCAAGGCTAGCATCACCCCAGGAACTGTTTTGATCCTCCTTGCTGGAAGG TTCAAAGGAAAGAGAGTTGTGTTCCTCAAGCAGCTTCCTTCTGGCTTGCTTTTGGTCACTGGGCCATTCAAGATCAATGGGGTTCCTCTGAGGCGGGTAA ACCAAGCATACGTCATCGGAACTTCCACAAAGCTCGACATTTCTGGCGCTAACGTGGATAAGTTTGACGACAAATACTTTGCCAAGACTGGTGAAAAGAA GAAGAAGAAGAGCGAGGGAGAATTCTTCGAGGAAGAGAAGGAGGAGAAGAGTGAGCTTCCCCAAGGCAAGAAGGATGACCAGAAGTCAGTTGATGCTGCT TTGCTCAAGGCAGTTGAGGCTGTCCCAGATTTGAAGTCCTACTTGGGTGCAAGATTCTCTTTGAAGGCAGGCATGAAGCCCCATGAGCTTGTGTTTTAA
AA sequence Show only first row Show all	>Lus10038776 pacid=23150439 polypeptide=Lus10038776 locus=Lus10038776.g ID=Lus10038776.BGIv1.0 annot-version=v1.0 MAPRKTPQVSRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGFFPKHDPKPKVVAPAEKASKFYPADDVKVPLPNRRKPKPTKLKASITPGTVLILLAGR FKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKLDISGANVDKFDDKYFAKTGEKKKKKSEGEFFEEEKEEKSELPQGKKDDQKSVDAA LLKAVEAVPDLKSYLGARFSLKAGMKPHELVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74050			Ribosomal protein L6 family pr...		Lus10038776 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10013188 [exp]	1.0	0.9510
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	2.8	0.9423
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	2.8	0.9235
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10004113 [exp]	3.5	0.9224
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	4.5	0.9194
AT5G04800			Ribosomal S17 family protein (...		Lus10041076 [exp]	4.6	0.9259
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	6.3	0.9225
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	6.6	0.9154
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	8.5	0.9117
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	8.9	0.9024

Compare expression of checked genes

Lus10038776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.