Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47690 1399 / 0 binding (.1.2.3) AT1G77600 418 / 7e-122 ARM repeat superfamily protein (.1.2.3) AT4G31880 178 / 2e-45 unknown protein AT1G15940 169 / 3e-42 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 157 / 6e-39 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G10950 84 / 2e-16 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 61 / 1e-08 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT1G05830 53 / 2e-06 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G44440 50 / 8e-06 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT4G32620 50 / 1e-05 Enhancer of polycomb-like transcription factor protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039082 [exp] 2722 / 0 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10025655 [exp] 392 / 3e-113 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018180 [exp] 383 / 1e-110 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018332 [exp] 197 / 5e-51 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 196 / 8e-51 AT4G31880 473 / 2e-152 unknown protein Lus10002307 [exp] 115 / 2e-26 AT4G31880 214 / 4e-61 unknown protein Lus10026078 [exp] 108 / 3e-24 AT4G31880 228 / 1e-66 unknown protein Lus10010010 [exp] 62 / 4e-09 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10041252 [exp] 56 / 3e-07 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005400 [exp] 1688 / 0 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 1664 / 0 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 505 / 5e-153 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.006G263300 [exp] 192 / 3e-49 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 184 / 5e-47 AT4G31880 389 / 3e-120 unknown protein Potri.001G046500 [exp] 172 / 1e-43 AT4G31880 267 / 1e-76 unknown protein Potri.003G181300 [exp] 153 / 2e-37 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.018G109600 [exp] 141 / 7e-34 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 132 / 5e-31 AT4G31880 167 / 8e-43 unknown protein Potri.014G121701 [exp] 60 / 2e-08 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038777 pacid=23150352 polypeptide=Lus10038777 locus=Lus10038777.g ID=Lus10038777.BGIv1.0 annot-version=v1.0 ATGGCGGATAAGCTCGAGGAGCAGCTTAGGGAAGTAGGATCCAAGCTAGACGCTCCTCCTTCTTCCAAGGATGCTCTGCTCAAGCTTTTGAAGCAAGCTG CTTTATGTCTCTCTGATATGGATCAATCTCCATCCCCTTCAATGACAGAGTCCATGCAACCATTATTAACTGCAATTGTTAAGCCAGAGTTGCTGCAGCA TCAAGATAGGGACGTGAAGCTTCTAGTCGCAACCTGCATCTGTGAAATCACCCGGATTACTGCACCTGAAGCTCCTTACAGTGATGACATTCTGAAGGTT ATCATTCTGCAGGATATATTTCAGTTGATTGTAAGCACCTTCAGTGGCTTAAGTGATGCAACTGCTGGTCCATCGTTTGGCAGGATAGCTCTCATTTTGG AGACTGTTGCCAAATACCGGTCCTGTGTCGTGATGTTGGATCTTGAATGTGACGATCTCATTAAAAAGATGTTCAGTACATTTTTTGCTGTCACCAGGGA TGACCATCAAGAAAATGTACTTGCCTCCATGCAAACCATCATGGTCGTTTTGATAGAAGAAAGTGAAGAAGTTAATGACGATCTTTTACTTGTAATATTA TCTGTTTTAGGCCGTAATAAAAGTGATGTTTCTAAGGCTGCAAGGAAGCTTGCTATTAATATCATCGAACAGTGTGCAGTTCAGCTTGAAGCTGGCATCA AACAGATCCTTGTTTCGTTAATGTCTGGAGATAACAGGTTTACAGATTCTCAAATTGACTACCATGAAGTTATCTATGATATCTATTGTTGTGCTCCTCA GATCTTGTCTGGAGTGGTACCATACCTCACTGGAGAGTTGTTGACTGATCAGCTGGACACTCGTTTGAAAGCAGTAGGATTAGTTGGAGAACTTTTTTCT TTACCGGGATCCACAATCATTGAGACATTTCGGCCGATCTTTCTGGAATTCCTGAAAAGGTTGACTGACAGGGTAGTTGAAGTTAGAATGTCTGTTCTTG AGCATGTAAAATGCTGTTTATTGTCAAATCCTATTCGCACCGAGGCTTCTGAAATGATATCTGCGCTATGTGAGCGATTGTTAGACTTTGATGAGAACAT TAGGAGGCAGGTCGTTGAGGTGCTCAGCAATGTTGCTATTCATGCCCCTGGTTCTGTTCCTGCTGAAACTATAAAGCTGGTCTCCGATCGTCTAAGAGAC AAATCTCTTACGGTTAAAAAATGTACCATGGAAAGGATAGCTGAGATCTTCAGGGCTTATTGCAAGAAATCTTCAGATTCCTCCATCATTTCCCATGACT ACGAATGGGTTCCTGGGAAGATTTTGAGATGCTTTTACGATAAAGATTTCAGGTCAGATGCAATAGAGTATATACTCTCTGTTTCCTTATTCCCAAGCGA TCTCTTGGTAAAGGATAGAGTTACACTTTGGGTCAGAATCTTCGCTACCTTTGACAAAATTGAACTGAAAGCTCTCGAGAAATTACTGGAGCAAAAGCTA AGGTTACAACAAGAGATGCAGAGGTACATGTCTCTTAGGTCGATGCATCAGGAGGGTGACGCACCAGAGATCCAAAAGAAGATTCTATTCTGCTTTCGGA TTATGTCTCGTTCCTTCGCTGATCCTGCTAAGGCCGAGGAGAATTTTCTGATACTTGATCAACTGAAAGATGCAAACGTCTGGAAACTTTTAGCTGGTCT GCTCGATGTAAATACTAGCTTGCAACAAGCTTGCATTAATCGGGACGATTTGGTCAAGATACTTGGTGAGAAACATGGGCTTTATGATTTTCTCAGTAGC CTGTCTGTCAAGTGTTCGTATCTACTTTTCAGTAAGGAGTATGTTAAAGAATTTTTTTCGGAGGCTGTATTACATAAGTGTTCTGGGAATTCAGCATTGA TTCAATCATCAGTGAATATATTGGTGACTCTTGCACGTTTTGGGCCATTGCTATTTGGGGGTGCTGAAGAAGAATTGATTAGCCTTTTAAAGGATGATAA TGAAATAATCAAAGAAGGTGCATTACACGTTTTGGCTATAGCCGGTGGCACTATCAGAGAGCAACTTGCAGTGTCCTCAAGGTGTAGTGTCAATCTTTCT TTCTCATACTGGACTTTTGCATTTTGCAGGAAACTTGTTGGCATGCTGGAAGAAAAGAGAAATTTGCCTGCTGTTCTCCAGTCTCTGGGATGCATTGCAC AAACTGCCATGTCAGTCTTTGAAACTAGAGAGACTGAAATTCAAGAATTTGTGAAAGACGGAATTCTGAATTGCAAGAGTCCAGAAGATGATGCAAAAGT TTGTTGGGACGATGTTAGTGAAACTAGTTTGTTGAAGATATATGGGCTTAAAGTGTTCGTCAAAAGCCACTTACCTATTAAAGATGTGCACCTCCGTCCT GGTATTGATGACCTTCTAGATATCCTGAAGAACCTACTGAAAGATGAAATATTACAGGGTACAGAATCAAGTTTGGTTGATAAAGCACATCTGCGGCTTG CTGCTGCGAAAGCAGTTCTTCGTCTGTCAAAGCACTGGGATCATAAGATACCTGTTGATATATTCCACTTGACTTTGAGAGTGGTTGAGAGTGCTTTCCC TGAAGCTAGGAAGATCTTTCTTGGAAAAGTTCATCAGTATATAAAGGATCGCCTTCTTGACCCCAAGTATGCTTGTGCATTCTTGTTCTATCCAATAGAA TCAGATCAGCTTGGTTTTGAGGAGGAAAAGCAGAATCTTGTTGATATTATTCAAATGCATTGCCAGTCAAAGGCACGCCAAGTGTCTTTACAAAGTGATG CAAGTCCCTTAACAGCTTTTCCTGAATCGATTCTGCCATACGTGGTCCATTCACTGGCGCATATCTCATGTCCTGACATAGACGAGTGTAAAGATGTTAA AGCATATGAGCCAATATATCGGCGACTATACTTGTTTCTTTCTTTGTTGATGCACAAAGAGGAAGAAGTAAAGTCAGAGGCTGACACCAATGTCAAAGAT AGCATATCTGTGATGACTTCTGTGTTTCAGGCTATCAAGGACTCAGAAGATATCATGGATATGACAAAGTCTAAGAAATCACGGGCTCTGTCTGAACTTG GATTGTCAATCGTCAAGCGCTTGGTTCCAAAGGAGGATGACTTACAGATGTTGGCTTTTCCAGTTACCCTGCCATCCATGTTGTACAAGCCATATGAAAA GAAAGAAGAACAATCTCTGGCAAATGAAGAGAAGACATGGCTTGTGGAGGACAGTGTAATGACACATTTTCAGTCACTAACTTTTGAAACCGATATAACA CAAAAGGATCCCGCACCCACTGCTGAGGAGGAAGTTCGAAAAGATAGTGACAAAGAAGAGGATGATGCGCCTCTTGGTGAGATGGTAAAACAGTTGAAGG CCAAGTCACCAAAATCCGGAAGGAATAAAAGGAATAAGAAAAAGAAATCTTCATCAGCTAAAGGCAAAAGCACGGAAAGTGATTTTGATATTTTGAAGAT GGTAAGGGAATTGGACGTGGATGATGTGGTAGTTTCCGGTAAGCTCAAGTCAAGCAATGGTCATAAAGATGCTCCAAGTCAGAACCCGAAATCAGAACTG GAACACCAAAAGGCGGAGAAAAGAAAATCAATTGATGTAGCGTCTGTCCCGGTACCTAAGCGTCGGAGATCATCAACCATTCATACTGCTGCTAGATTGT CCCAGAGTCCAATGAAAGCTCTTTCAAGAGCTTCAGCAGAAGATTCAAATCCTGATTTTAAAAACAAAGGCTCATTTCCAAAGAAGATGGATAGAAGTGG TGACTCCGATTTTTTGGTATCATGTGTTAGAAAGAGTAGAAATTCTGTACCAACGAAGGAATTCAAGATTTTTGATTTCGATGGTGATGATAGTGAGAAT GACGCTAAACAGTCCGATGAAGAAAATTGGACGAGCCCCAGTCTTCGCAGAAAGAACGACAAGAACAATGGAAAACATATCGCAAAGCCTTCTACAGAAT CTGCTTCGAAGAGGAAAAGAAAAAGTGTTTCAGGAGGCCAAAAGCTCGCAAAGAAGGATGGTGGCATAGATCTGGAAGCATTGATTGGTAATAGAATAAA GGTTTGGTGGCCAATGGACAAGGAGTTTTATGCTGGAACAATCAAGTCTTATGACCCTTTAAAGGGAAAGCATGTGATCTTATATGATGATGGAGATATA GAAGTTCTTCGTTTGGATAGAGAGCGTTGGGAACTGGTTGACAAGAGTCGGAAGAATATAAAGAAGCTCAATTCGTCTAAGCGTGCTCCTTCTAAGGATG GGTCTGCCACACCGAAGAAAAGGAGTAAAGGTGGTTCACAGCAGAATAAGAGCTCCACCAAAAAAGCTAAAGCTAAAAGAACAAAGAAGAAAGCCTCAAA GCAAGTCCTGAAAGAGCCAGAAGATGATGAGCCTTCCGACGCATCTGTTCCAGAACTTGCTGTTCCATCTGATGGAGAAGAAACAAAATCAGATGACTCT CAAGTTGAACGCGAGGAAGAAGAAACCAAGACTCCGACAAAGGAGGCGGAATCTGATAAGGAAGATACATCAACTTCTGGAGGTAAAAACTTGGAGGATG AAGCGGATAAGAAAAACTCCGATCATTCGGAGGATGATGATGGAGAAGGAGAACCCAGTTCAAAAGCAAAAGATTCTGACAACGAAAGTGAGAAACAAGA ATCGGAGAAGAGTGGTGCTGCTGATGAGGGATCTCATTCAGAAGAAAAGAAGGCAGAACAATCAGAAGATGAAGGCACATTAGAGGAAGCTGGTGATGGA GACGAATCAGGTTCAGAGGATACTGAAGATGCAAATGATGCCGAGGAGGATGAGACCGGTGCAAAAGAGTCATCAAGTCCGGTTGCTATGGATGTGGATG ATGAAATTCCAGACGATGAGCCTCTTCGCAAATGGAAGGATAAATTCGGGAAGAAGGCAGCATCAAAACGAGCAAAATGA
AA sequence Show only first row Show all	>Lus10038777 pacid=23150352 polypeptide=Lus10038777 locus=Lus10038777.g ID=Lus10038777.BGIv1.0 annot-version=v1.0 MADKLEEQLREVGSKLDAPPSSKDALLKLLKQAALCLSDMDQSPSPSMTESMQPLLTAIVKPELLQHQDRDVKLLVATCICEITRITAPEAPYSDDILKV IILQDIFQLIVSTFSGLSDATAGPSFGRIALILETVAKYRSCVVMLDLECDDLIKKMFSTFFAVTRDDHQENVLASMQTIMVVLIEESEEVNDDLLLVIL SVLGRNKSDVSKAARKLAINIIEQCAVQLEAGIKQILVSLMSGDNRFTDSQIDYHEVIYDIYCCAPQILSGVVPYLTGELLTDQLDTRLKAVGLVGELFS LPGSTIIETFRPIFLEFLKRLTDRVVEVRMSVLEHVKCCLLSNPIRTEASEMISALCERLLDFDENIRRQVVEVLSNVAIHAPGSVPAETIKLVSDRLRD KSLTVKKCTMERIAEIFRAYCKKSSDSSIISHDYEWVPGKILRCFYDKDFRSDAIEYILSVSLFPSDLLVKDRVTLWVRIFATFDKIELKALEKLLEQKL RLQQEMQRYMSLRSMHQEGDAPEIQKKILFCFRIMSRSFADPAKAEENFLILDQLKDANVWKLLAGLLDVNTSLQQACINRDDLVKILGEKHGLYDFLSS LSVKCSYLLFSKEYVKEFFSEAVLHKCSGNSALIQSSVNILVTLARFGPLLFGGAEEELISLLKDDNEIIKEGALHVLAIAGGTIREQLAVSSRCSVNLS FSYWTFAFCRKLVGMLEEKRNLPAVLQSLGCIAQTAMSVFETRETEIQEFVKDGILNCKSPEDDAKVCWDDVSETSLLKIYGLKVFVKSHLPIKDVHLRP GIDDLLDILKNLLKDEILQGTESSLVDKAHLRLAAAKAVLRLSKHWDHKIPVDIFHLTLRVVESAFPEARKIFLGKVHQYIKDRLLDPKYACAFLFYPIE SDQLGFEEEKQNLVDIIQMHCQSKARQVSLQSDASPLTAFPESILPYVVHSLAHISCPDIDECKDVKAYEPIYRRLYLFLSLLMHKEEEVKSEADTNVKD SISVMTSVFQAIKDSEDIMDMTKSKKSRALSELGLSIVKRLVPKEDDLQMLAFPVTLPSMLYKPYEKKEEQSLANEEKTWLVEDSVMTHFQSLTFETDIT QKDPAPTAEEEVRKDSDKEEDDAPLGEMVKQLKAKSPKSGRNKRNKKKKSSSAKGKSTESDFDILKMVRELDVDDVVVSGKLKSSNGHKDAPSQNPKSEL EHQKAEKRKSIDVASVPVPKRRRSSTIHTAARLSQSPMKALSRASAEDSNPDFKNKGSFPKKMDRSGDSDFLVSCVRKSRNSVPTKEFKIFDFDGDDSEN DAKQSDEENWTSPSLRRKNDKNNGKHIAKPSTESASKRKRKSVSGGQKLAKKDGGIDLEALIGNRIKVWWPMDKEFYAGTIKSYDPLKGKHVILYDDGDI EVLRLDRERWELVDKSRKNIKKLNSSKRAPSKDGSATPKKRSKGGSQQNKSSTKKAKAKRTKKKASKQVLKEPEDDEPSDASVPELAVPSDGEETKSDDS QVEREEEETKTPTKEAESDKEDTSTSGGKNLEDEADKKNSDHSEDDDGEGEPSSKAKDSDNESEKQESEKSGAADEGSHSEEKKAEQSEDEGTLEEAGDG DESGSEDTEDANDAEEDETGAKESSSPVAMDVDDEIPDDEPLRKWKDKFGKKAASKRAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	1.4	0.9642
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	1.7	0.9642
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	3.0	0.9475
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	3.5	0.9619
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	3.9	0.9536
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	5.7	0.9449
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	7.1	0.9394
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	7.5	0.9381
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	7.6	0.9331
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	8.4	0.9464

Compare expression of checked genes

Lus10038777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.