Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47680 313 / 1e-105 AtTRM, TRM10 tRNA modification 10, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039081 [exp] 501 / 4e-179 AT5G47680 358 / 1e-122 tRNA modification 10, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004900 [exp] 360 / 2e-124 AT5G47680 312 / 1e-105 tRNA modification 10, unknown protein Potri.016G005500 [exp] 357 / 4e-123 AT5G47680 329 / 5e-112 tRNA modification 10, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF01746 [flax] [poplar] tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10038778 pacid=23150650 polypeptide=Lus10038778 locus=Lus10038778.g ID=Lus10038778.BGIv1.0 annot-version=v1.0 ATGGCCGGTAGCGACGTCGACGGTGCCGAAAATGCCACAGAGATTCTCCAAAGCTCTACCGACGGCACGGAAAGCAACCAGGCACCGCCTGTTCCTCCTA CCACCGCGCTCTCCAAGAACGCTCAGAAGAAGTTGTTGAAGCAGCAGAAGTTCGAGGCGAAGAAAGCCGAGAAGAAAGCTTTCGCCAAGGAGCAGAAGAA GAAGGAAGGCGAGCAGAAGCGGAAGGAATGGGAGGAGAAGCTGGCATCCATCCCGGAGGAAGAGAGGTTGAAGCTTATCGAATCTAGGAAAGCTTTGAGG AAGGAGAGAATGGAGTCGCGATCGGAGGAGAAGAATAAGAAGCTTGAGCGGCTTAGCAAAGCGAGAGAGCAAGGCCAGAACATCGTCATCGACCTCGAAT TCGCTGACCTTATGACCGTCCCTGAGATTCACAGCCTTGTTCAACAGATAATGTACTGTTATGCCGAGAATGGGAGATGCAAAACCCCGGGGCATCTATG GCTGACAGGGTGCCAAGGGGACATGGAAAACCAATTGAAGACACTTCCCGGATTTGACAAGTGGATGATCGAGAAGGAGAGTCAATCATACATCGAAGCA TTCAAAGATGAGAAGGAGAAGTTAGTGTACCTCACGGCGGATTCTGAAACCGTGTTAGACGAACTCGATATTAGCAAAACATACATTGTTGGTGGGTTGG TGGATAGGAATCGGTTTAAAGGGATAACCTTGAAGAAAGCAGAGGAGCAAGGAATCCAGACTGCAAAACTTCCCATAGGCAACTTCTTGAAGATGTCTAG TTCTCAGGTGCTAACAGTAAACCAAGTCATGGAAATACTACTTAAGTTCTTGGAAACCAGAGACTGGAAGGAGTCATTTTTCCATGTGATTCCGCAGAGG AAAAGATGTGAAACTGATGCACCAGCAGGCAATCAAGAAACAGAAGAGAGAGATGGAGTTGATCAGGAGGCATCAGAGAGTAAGAGAAAGTGCGTTGAGG TTCCTAGTAGCTAG
AA sequence Show only first row Show all	>Lus10038778 pacid=23150650 polypeptide=Lus10038778 locus=Lus10038778.g ID=Lus10038778.BGIv1.0 annot-version=v1.0 MAGSDVDGAENATEILQSSTDGTESNQAPPVPPTTALSKNAQKKLLKQQKFEAKKAEKKAFAKEQKKKEGEQKRKEWEEKLASIPEEERLKLIESRKALR KERMESRSEEKNKKLERLSKAREQGQNIVIDLEFADLMTVPEIHSLVQQIMYCYAENGRCKTPGHLWLTGCQGDMENQLKTLPGFDKWMIEKESQSYIEA FKDEKEKLVYLTADSETVLDELDISKTYIVGGLVDRNRFKGITLKKAEEQGIQTAKLPIGNFLKMSSSQVLTVNQVMEILLKFLETRDWKESFFHVIPQR KRCETDAPAGNQETEERDGVDQEASESKRKCVEVPSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10038778 [exp]	0	1
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10029583 [exp]	1.7	0.9344
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	2.8	0.9465
AT5G52370			unknown protein		Lus10016449 [exp]	6.0	0.9326
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	6.6	0.9344
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	7.6	0.8992
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	12.2	0.9027
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	13.2	0.9292
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	13.4	0.9184
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	13.9	0.9272
AT1G13690		ATE1	ATPase E1 (.1)		Lus10014565 [exp]	19.3	0.8584

Compare expression of checked genes

Lus10038778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.