Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47660 114 / 9e-28 Trihelix Homeodomain-like superfamily protein (.1) AT1G76890 100 / 9e-23 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 92 / 9e-20 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 89 / 9e-19 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 77 / 7e-15 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G03680 66 / 3e-11 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 64 / 7e-11 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT3G25990 54 / 8e-08 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 49 / 2e-06 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 47 / 9e-06 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039080 [exp] 638 / 0 AT5G47660 176 / 3e-50 Homeodomain-like superfamily protein (.1) Lus10018887 [exp] 93 / 5e-20 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 92 / 9e-20 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 91 / 1e-19 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 89 / 8e-19 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 87 / 3e-18 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 87 / 3e-18 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 86 / 7e-18 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10015924 [exp] 68 / 6e-12 AT5G28300 231 / 2e-68 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005900 [exp] 150 / 1e-41 AT5G47660 159 / 7e-45 Homeodomain-like superfamily protein (.1) Potri.018G049700 [exp] 98 / 1e-21 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2) Potri.001G454500 [exp] 97 / 2e-21 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.018G049301 [exp] 96 / 3e-21 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 94 / 4e-21 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 96 / 6e-21 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 94 / 1e-20 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 94 / 1e-20 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.011G147400 [exp] 94 / 2e-20 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.019G010200 [exp] 93 / 3e-20 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038779 pacid=23150557 polypeptide=Lus10038779 locus=Lus10038779.g ID=Lus10038779.BGIv1.0 annot-version=v1.0 ATGGAATTACTGATCGGCGACCGGCGAATCAAGAACCCGGAAACCTTCCCGCAATCATTCCCCCCATTCACGGCCGCCGCCGCCGACAACCTCGCTCCTT CCACCCTCCCAGTTCCGCCCGACGACGACTTCACTGCTTTCCGCGGCTTCCCTCCTCATAAGCTCCGCCCAATCAGAAGGAACCCTAGGTCTCCGTCCCA GGTGAGAAATGATAATCAGCTAGGGCACTGCCATTCGAGCGCGATGGAGCTGGACGGGACTTTTGACAAGCTGGGGGTTTTGGTGAATGAAGTCTGTGCG GATGCTGGTGGGTACTTCGGTTTGGCTCCCGATGAAGCTGATTGTGTCAATATTGGTAGGAGTGTTGCCGGCGGGGCCAAAGGGCAGTGCTTGACCCGGG ATTGTTCTCCAGGAGACGATTCGGGTTCCGGTAGGCAGAAGCTGAATGTTGAGGCGAACCGCGATGGTGACGAATCTAGCTCATCAACTAATGATGATGA CTCCTCAGCAAGCACGGAAAAGGTTGCAGGTAGTAAGAGGAAGAGGAAAGCAAGGGAGAAGCTTGAGGAGTATGTGGAAAGATTGACGATGAAAGTGATG GAGAAGCAAGAACGGTTACACAGAGAGCTTATGGTGATACTGGAAAGGAAAGAGAAGGAGAGGATCATGCGAGAAGAAGCTTGGAAACGGCAGGAGATAG AGAGGATGGAAAGAGAAGAGGCAGCCAGGGCTCAGGAGATATCTCACAACATAGCTTTCATCTCCTTTATCAAGAAGGCAATTGGCAACAGCAATGGAGG TGAAGAAATCCCTCAGGCAGCAGCTACTTCGCCCGTGGTTGATGATCAAGCAAAAGAAGGATACTCTTCTCCTCCCTTTGAGAGGAAAGATTCATGCGAT CCAAGCAGTAAAAAATGGCCTGAAGCTGAAGTACAGGCCCTTATAAAGATTCGAACTTCTTTCGAGCAGAAGTTCCGAGTCATGGGCTACACCAGCTCTT ACGTTTGGGATGAGATATCTGCTAGAATGCAGAAGATGGGCTATCACCGTACTGGAAAGAATTGTAGGTCGAAATGGGAGAATATGAACAGCTACTTCAA AAGATCGTTGGGAACTGGTGAGAAGAAAAGGCGCGACAGTAGCAGGATGCCTTACTTCAATGAACTGGAACGTTTGTACAAAAATGAGGTATTCTGTTCA TCCATTACTCCTAATCAGAGAACCGGCGAGGACTCGGAAAGTGATGTGAAGGTAAACCGGCGAACAAACTGA
AA sequence Show only first row Show all	>Lus10038779 pacid=23150557 polypeptide=Lus10038779 locus=Lus10038779.g ID=Lus10038779.BGIv1.0 annot-version=v1.0 MELLIGDRRIKNPETFPQSFPPFTAAAADNLAPSTLPVPPDDDFTAFRGFPPHKLRPIRRNPRSPSQVRNDNQLGHCHSSAMELDGTFDKLGVLVNEVCA DAGGYFGLAPDEADCVNIGRSVAGGAKGQCLTRDCSPGDDSGSGRQKLNVEANRDGDESSSSTNDDDSSASTEKVAGSKRKRKAREKLEEYVERLTMKVM EKQERLHRELMVILERKEKERIMREEAWKRQEIERMEREEAARAQEISHNIAFISFIKKAIGNSNGGEEIPQAAATSPVVDDQAKEGYSSPPFERKDSCD PSSKKWPEAEVQALIKIRTSFEQKFRVMGYTSSYVWDEISARMQKMGYHRTGKNCRSKWENMNSYFKRSLGTGEKKRRDSSRMPYFNELERLYKNEVFCS SITPNQRTGEDSESDVKVNRRTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	0	1
AT4G22720			Actin-like ATPase superfamily ...		Lus10029108 [exp]	3.9	0.7930
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	4.5	0.8173
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	6.0	0.8393
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	9.2	0.8154
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	13.7	0.8054
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	14.5	0.7205
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	15.9	0.7845
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10002382 [exp]	18.0	0.7560
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	19.2	0.7739
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	20.7	0.7691

Compare expression of checked genes

Lus10038779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.