Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47650 343 / 4e-118 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G12720 289 / 1e-96 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT4G25434 275 / 2e-91 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04450 263 / 2e-86 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT5G47240 258 / 2e-83 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04430 249 / 8e-81 ATNUDT5 nudix hydrolase homolog 5 (.1) AT2G04440 151 / 4e-44 MutT/nudix family protein (.1) AT3G10620 43 / 0.0001 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 42 / 0.0002 ATNUDX25 nudix hydrolase homolog 25 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039079 [exp] 631 / 0 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012319 [exp] 299 / 2e-100 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 285 / 1e-94 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10012320 [exp] 270 / 3e-89 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 268 / 2e-88 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10040169 [exp] 244 / 3e-78 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 252 / 4e-78 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10029398 [exp] 47 / 7e-06 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10021279 [exp] 47 / 1e-05 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005400 [exp] 388 / 1e-134 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 375 / 1e-129 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 355 / 8e-123 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 332 / 3e-113 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 323 / 5e-110 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 323 / 2e-109 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 310 / 3e-105 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G080400 [exp] 261 / 2e-84 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.001G154300 [exp] 258 / 1e-83 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 234 / 3e-74 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10038780 pacid=23150277 polypeptide=Lus10038780 locus=Lus10038780.g ID=Lus10038780.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTTTCCTCTAATCTCTTTTCCCCTGCAACCATTGTTCTCCCTTCCTCTTCCTCTTCTTCTTCTTCTGCTGCATTCGATCCATCGCTCCCCC ATCTCTCCTTCTCCTTCCATTCCCCAACTCCTGGCAAGCGCCTCTCCTCTTTCAGACGACTGTCGTGTTGTTTTGATAATGTAGCCCCCTTTGCAACTTT AGGCCAACGAGTTTCTCTCAACATCAGGTTTTTGTCAAACTCAGTGAATCCTCGACCAGCTGCGATGGAGAAAGTGGTTGCTGCTGCTGTAACTGATGGT CAACAAGTTCAGTTGCTCACTTCAGTGAATGATCACCATGGAGGAGTCATAGTCGAGGTCTCTGAACCTATGGACCCACTGCTCTTTTCTTCAATGCTTA GAGTTTCAATCGTCGAGTGGAGAAAGCTGGGCAAGAAGGGGCTGTGGATCAAACTTCCTATTCAGCTTGCCAATCTTATTGAAGTTGCAGTCAAGGAAGG ATTCTGGTACCATCATGCAGAGCCAACGTATTTGATGCTTGTTAATTGGCTACCTGGAGGTGCTAACCCTCTTCCTCCGAATGCCAGTCATAGAGTGGGT GTTGGTGCATTCGTCATGAATGATAAGAGAGAGGTGCTAGTGGTCCAAGAAAACAGTGGATTCTTTCGAGGAACAGGAATCTGGAAGTTCCCTACCGGAG TTGTTGAAGAGGGAGAGGACCTATGTACAGCTGCTGTAAGGGAAGTAAAGGAAGAAACAGCAATTGACACAGAGTTTGTAGAAATATTGGCATTCAGGCA ATCCCACAAGGCATTTTTCGAAAAGTCGGACATGTTCTTCTTGTGCATGTTACGCCCTATCTCATACGACATCCAAAGGCAAGAAGCTGAGATAGATGCA GCAGAGTGGATGGGTTGGGATGAATACGTAGCTCAGCCGTTCGTTCAGAATACTGAATTTGTGAAGCACATAACTGATATATGCTTGGCAAAGGCAGATG GGGACTATACTGGGTTTTCACCTCTGGCCAGTGCTTCACTTGGAGGCCAAGTGAGCTATGTGTACCACAACGCACAAGGCCTGAGAAGATAG
AA sequence Show only first row Show all	>Lus10038780 pacid=23150277 polypeptide=Lus10038780 locus=Lus10038780.g ID=Lus10038780.BGIv1.0 annot-version=v1.0 MASFSSNLFSPATIVLPSSSSSSSSAAFDPSLPHLSFSFHSPTPGKRLSSFRRLSCCFDNVAPFATLGQRVSLNIRFLSNSVNPRPAAMEKVVAAAVTDG QQVQLLTSVNDHHGGVIVEVSEPMDPLLFSSMLRVSIVEWRKLGKKGLWIKLPIQLANLIEVAVKEGFWYHHAEPTYLMLVNWLPGGANPLPPNASHRVG VGAFVMNDKREVLVVQENSGFFRGTGIWKFPTGVVEEGEDLCTAAVREVKEETAIDTEFVEILAFRQSHKAFFEKSDMFFLCMLRPISYDIQRQEAEIDA AEWMGWDEYVAQPFVQNTEFVKHITDICLAKADGDYTGFSPLASASLGGQVSYVYHNAQGLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10038780 [exp]	0	1
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	7.1	0.8440
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10040081 [exp]	19.1	0.8201
AT4G14605			Mitochondrial transcription te...		Lus10035227 [exp]	19.5	0.8263
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	26.6	0.8031
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	29.3	0.8215
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	30.2	0.8058
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10016545 [exp]	36.8	0.7743
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	41.0	0.8027
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	41.7	0.7861
AT4G16444			unknown protein		Lus10035992 [exp]	43.7	0.7448

Compare expression of checked genes

Lus10038780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.