Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47630 112 / 8e-33 MTACP3 mitochondrial acyl carrier protein 3 (.1.2) AT2G44620 85 / 3e-22 MTACP1, MTACP-1 mitochondrial acyl carrier protein 1 (.1) AT1G65290 75 / 3e-18 MTACP2 mitochondrial acyl carrier protein 2 (.1) AT3G05020 44 / 3e-06 ACP1 acyl carrier protein 1 (.1) AT1G54630 41 / 3e-05 ACP3 acyl carrier protein 3 (.1.2) AT1G54580 41 / 4e-05 ACP2 acyl carrier protein 2 (.1) AT5G27200 40 / 7e-05 ACP5 acyl carrier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039077 [exp] 240 / 9e-84 AT5G47630 119 / 1e-35 mitochondrial acyl carrier protein 3 (.1.2) Lus10000050 [exp] 240 / 9e-84 AT5G47630 119 / 1e-35 mitochondrial acyl carrier protein 3 (.1.2) Lus10020221 [exp] 87 / 5e-23 AT1G65290 183 / 4e-61 mitochondrial acyl carrier protein 2 (.1) Lus10026849 [exp] 86 / 2e-20 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10043348 [exp] 77 / 3e-19 AT2G44620 186 / 1e-62 mitochondrial acyl carrier protein 1 (.1) Lus10019500 [exp] 77 / 3e-19 AT2G44620 186 / 1e-62 mitochondrial acyl carrier protein 1 (.1) Lus10038636 [exp] 44 / 3e-06 AT4G25050 134 / 3e-41 acyl carrier protein 4 (.1.2) Lus10038635 [exp] 44 / 3e-06 AT4G25050 134 / 3e-41 acyl carrier protein 4 (.1.2) Lus10037910 [exp] 40 / 8e-05 AT4G25050 130 / 4e-40 acyl carrier protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005700 [exp] 160 / 7e-52 AT5G47630 107 / 5e-31 mitochondrial acyl carrier protein 3 (.1.2) Potri.016G006300 [exp] 145 / 7e-46 AT5G47630 111 / 1e-32 mitochondrial acyl carrier protein 3 (.1.2) Potri.019G055300 [exp] 80 / 4e-20 AT1G65290 196 / 6e-66 mitochondrial acyl carrier protein 2 (.1) Potri.013G084500 [exp] 79 / 1e-19 AT1G65290 188 / 5e-63 mitochondrial acyl carrier protein 2 (.1) Potri.014G044000 [exp] 77 / 5e-19 AT2G44620 163 / 2e-53 mitochondrial acyl carrier protein 1 (.1) Potri.002G135600 [exp] 68 / 1e-15 AT2G44620 177 / 1e-58 mitochondrial acyl carrier protein 1 (.1) Potri.006G217800 [exp] 42 / 1e-05 AT1G54630 94 / 2e-25 acyl carrier protein 3 (.1.2) Potri.015G104500 [exp] 40 / 5e-05 AT4G25050 122 / 2e-36 acyl carrier protein 4 (.1.2) Potri.012G105300 [exp] 38 / 0.0004 AT4G25050 107 / 8e-31 acyl carrier protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0314 [flax] [poplar] PP-binding PF00550 [flax] [poplar] PP-binding Phosphopantetheine attachment site
Representative CDS sequence Show only first row Show all	>Lus10038782 pacid=23150671 polypeptide=Lus10038782 locus=Lus10038782.g ID=Lus10038782.BGIv1.0 annot-version=v1.0 ATGCAGAGTGTCAGAAATTTTTTTTTGAGCCATATCAGGGTGAGGGTAGTTCCCGAACAATGGTCGCATCATCAGAGGGCTGGTCTGTTCAAGAAATTGC AAATGGGATTTTGTGCTGCAACGGATGCAATTCCTGAGCACATTATGAATCGGGTTATTGGATTGGTTAAGAAATTTGACAAAATAGAAGCCAACAAGGT TACTGAAACAGCTTATTTCCAGCAAGATTTATGCCTGGACAGTCTAGACAGGGTGGAGCTTGTCATGGCTTTCGAAGAGGAGTTTGATGTTGTGATCCCT GATAAAGAAGCAGACAAACTCTTGTGCTGTGCTGATGTTGCAAGATTTATATCTTCTGCAAACAGATCGTAA
AA sequence Show only first row Show all	>Lus10038782 pacid=23150671 polypeptide=Lus10038782 locus=Lus10038782.g ID=Lus10038782.BGIv1.0 annot-version=v1.0 MQSVRNFFLSHIRVRVVPEQWSHHQRAGLFKKLQMGFCAATDAIPEHIMNRVIGLVKKFDKIEANKVTETAYFQQDLCLDSLDRVELVMAFEEEFDVVIP DKEADKLLCCADVARFISSANRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10038782 [exp]	0	1
AT2G41600			Mitochondrial glycoprotein fam...		Lus10042041 [exp]	3.9	0.7437
AT5G04000			unknown protein		Lus10018038 [exp]	5.3	0.7745
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10019163 [exp]	6.2	0.7540
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	8.1	0.7431
AT2G32520			alpha/beta-Hydrolases superfam...		Lus10035287 [exp]	9.4	0.7442
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10038195 [exp]	13.4	0.7073
AT3G60480			unknown protein		Lus10034728 [exp]	14.8	0.7233
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	17.2	0.7519
AT3G09890			Ankyrin repeat family protein ...		Lus10023911 [exp]	18.7	0.7158
AT3G13845			unknown protein		Lus10015617 [exp]	18.7	0.7240

Compare expression of checked genes

Lus10038782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.