Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT5G21170 224 / 3e-72 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT2G28060 88 / 1e-21 5'-AMP-activated protein kinase beta-2 subunit protein (.1) AT1G09020 56 / 2e-08 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT3G01510 47 / 1e-05 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039076 [exp] 528 / 0 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037424 [exp] 246 / 7e-81 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 238 / 5e-77 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10006390 [exp] 207 / 1e-65 AT4G16360 222 / 3e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10012343 [exp] 194 / 1e-61 AT4G16360 220 / 1e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10003355 [exp] 105 / 3e-28 AT2G28060 150 / 2e-48 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008427 [exp] 105 / 5e-28 AT2G28060 157 / 6e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10004490 [exp] 60 / 7e-10 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 59 / 1e-09 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006400 [exp] 435 / 5e-155 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.006G005800 [exp] 427 / 6e-152 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.001G220800 [exp] 244 / 5e-80 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G021600 [exp] 241 / 1e-78 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.014G167400 [exp] 237 / 4e-77 AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.009G008700 [exp] 100 / 3e-26 AT2G28060 158 / 2e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.004G213600 [exp] 97 / 7e-25 AT2G28060 156 / 8e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.010G023500 [exp] 54 / 5e-08 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 49 / 2e-06 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 46 / 2e-05 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04739 [flax] [poplar] AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain
Representative CDS sequence Show only first row Show all	>Lus10038783 pacid=23150292 polypeptide=Lus10038783 locus=Lus10038783.g ID=Lus10038783.BGIv1.0 annot-version=v1.0 ATGGGGAATGTGAACGGAAGAGAGGAGGATGGGGAAGGAGGAGTTGGTGGAGGAGGAGAGGATGAAGAAGTGAGAAACGGTGCTTTATTGGGCGGCGATT CTGTTGACGAGCAAAGACGGCGAAGTGGGGTCATGGTTGTTCCTCATGGCGGCGGTGGCGGCGTCGTTTACCGGCCTCCGCACCCGGAGTTGATGAGTCA CTCTCCTCCCCACAGTCCTAGAGCCACTCACTCCCCTCTCATGTTCACTCCACAGGTTCCAGTGGTGCCATTGCCAAGGCCTGATGAGGTTCAAATACCG AGCGATTCATGGATGCAAAGCTCCGGTGGTTACGAGGAAACACTCCAGGAGCAAGGGATTCCAACGATGATAACATGGAGCTACGGTGGTAAGGGTGTAG CAGTGGAAGGATCTTGGGATGATTGGAAAGCAAGAATTCCACTGCAGAAAGCTGGTAAGGACTTCACCATCATGAAGGTGCTGCCTTCAGGTGTTTACCA ATACCGGTTTATCGTTGATGGGCAGTGGAGACATATCCCTGACTTGCCCTGCACCCAAGATGATGCTGGAAATACCTACAACGTTTTGGATTTGCAGGAT TACGTTCCAGAAGACCTAGAAAGCATATCAAGCTTCGAACCCCCTCAATCTCCTGAGGCAAGCTACACGAATCTGCATCTGGGAAACGAGGATTTCGCAA AGGAACCACCTTTTGTCCCTCCGCATTTACAGATGACATTGCTTAACTTGCCATCATCGTACATGGAGATTCCACCTCCTCTGTCGAGACCTCCGCACGT GGTACTCAATCACCTCTACATGCAAAAGGGGAAGAGTAGTCCTGCAGTAGTTGCACTCGGTTCAACACATCGGTTCTCGGCCAAGTATGTGACTGTTGTG CTATATAAATCCTTGCAGAGGTAA
AA sequence Show only first row Show all	>Lus10038783 pacid=23150292 polypeptide=Lus10038783 locus=Lus10038783.g ID=Lus10038783.BGIv1.0 annot-version=v1.0 MGNVNGREEDGEGGVGGGGEDEEVRNGALLGGDSVDEQRRRSGVMVVPHGGGGGVVYRPPHPELMSHSPPHSPRATHSPLMFTPQVPVVPLPRPDEVQIP SDSWMQSSGGYEETLQEQGIPTMITWSYGGKGVAVEGSWDDWKARIPLQKAGKDFTIMKVLPSGVYQYRFIVDGQWRHIPDLPCTQDDAGNTYNVLDLQD YVPEDLESISSFEPPQSPEASYTNLHLGNEDFAKEPPFVPPHLQMTLLNLPSSYMEIPPPLSRPPHVVLNHLYMQKGKSSPAVVALGSTHRFSAKYVTVV LYKSLQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	0	1
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	1.0	0.8860
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	6.5	0.8571
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10008422 [exp]	7.2	0.8702
AT1G13940			Plant protein of unknown funct...		Lus10021644 [exp]	8.9	0.8016
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	9.2	0.8678
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	10.2	0.8323
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	10.6	0.8385
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	10.9	0.8457
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	15.2	0.8667
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	15.5	0.8331

Compare expression of checked genes

Lus10038783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.