Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16370 1302 / 0 ATOPT3 oligopeptide transporter (.1) AT1G09930 841 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 841 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G10770 823 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 809 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT4G26590 774 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G53520 773 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 758 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT5G55930 756 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039075 [exp] 1512 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10041897 [exp] 811 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 808 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10006581 [exp] 783 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10032585 [exp] 758 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 756 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 755 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 753 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 749 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006500 [exp] 1289 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.006G006000 [exp] 1278 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.009G079500 [exp] 839 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 835 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.003G145500 [exp] 833 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.002G109300 [exp] 823 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.007G056900 [exp] 811 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 807 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 791 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.001G369700 [exp] 753 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10038784 pacid=23150296 polypeptide=Lus10038784 locus=Lus10038784.g ID=Lus10038784.BGIv1.0 annot-version=v1.0 ATGCCGACCAAACCCGAACCCGGAACCCAACCCACTAGAACCCAAATCCAACTCCCGAAACAATCCGACCCGGATTCGGAGCCCCACGAACGATGCCCGG TGGAGGAAGTAGCTCTGGTGGTGCCGGAAACCGACGACCCGTCTCTCCCGGTGATGACATTCCGAGCATGGTCTCTGGGTCTAATCTGCTGCACTCTCCT CATCTTCCTCAACACTTTCTTCACTTACAGGACCCAACCCCTCGTCATCTCCGCCATCCTCATGCAGATTGCCGTCCTGCCCATTGGCAAATTCATGGCC AGAGCTCTCCCCACCAGGGACTTTAATTTCTTCGGCCTTTGGAAGTTCAGTCTCAATCCTGGGCCGTTTAACATGAAGGAGCATGTTATCATCACCGTCT TCGCCAATTGCGGGGTTTCCATGGGTGGCGGCGACGCTTACTCCATTGGCGCCATTACTGTTATGAAGGCTTACTACAAACAGAGCCTCAGCTTCCTCTG CGCTCTCTTCATCGTCTTGACCACCCAGGTGTTGGGGTATGGATGGGCGGGGATGTTGAGGAGGTATTTGGTGGATCCAGTTGAGATGTGGTGGCCTTCG AATCTTGCCCAAGTCTCACTCTTCAGAGCTCTTCATGAGAAGGAGGTGAAGAACAAAGGCCCGACTAGAATGCAGTTCTTCCTTATAGCCTTGACAATAA GCTTCCTCTACTATGCTTTACCAGGCTACTTGTTCCCAATCCTGACATTCTTCTCCTGGGTTTGCTGGGCATGGCCTAACAGCATCACGGCTCAACAGAT AGGTTCGGGATACCATGGTCTCGGCTTAGGTGCTTTCACCCTTGATTGGGCCGGTATCACTGCTTACCATGGAAGCCCTCTTGTAACACCGTGGACTTCC ATTGTCAATGTTGGTGTTGGCTTTATCATGTTCATCTACATCGTTGTCCCAGTCTGTTACTGGAAGTTCAACACTTTCGATGCTCGAAAATTCCCCATTT TCTCAAACCAGCTGTTTACTACCACCGGTTCGAAGTACGATACGACCAAGATCTTGACGCCAAATTTCGACCTCAATGTCGATGCATACAACAGCTATGG CAAGCTTTACTTGAGCCCTCTCTTTGCCCTGTCGATTGGATCGGGGTTCGCGAGGTTCACTGCTACAATAGTTCATGTGGCCCTCTTCCATGGGAGCGAT ATATGGAGGCAGAGTCGATCGGCAATGAAGAATAACATGAAGCTGGATGTTCATGCTAAGCTGATGAAAGCTTACAAACAAGTGCCGGAATGGTGGTTCA TGATTCTGTTGGGTGGAAGCATTGTTCTGTCTCTAATGATGTCTTTCATTTGGAAAGCAGATGTTCAGCTTCCATGGTGGGGGATGATCTTTGCTTTTGC CTTGGCCTGGATAGTTACCCTTCCCATTGGTGTTATTCAAGCAACAACGAACCAGCAACCGGGATATGACATCATAGCTCAGTTCATGATTGGATATGTC CTCCCTGGGAAGCCAATAGCTAACTTGTTGTTCAAGATATACGGAAGAATCAGCACGGTCCATGCTCTCTCTTTTTTGTCCGACCTAAAGCTCGGTCACT ATATGAAGATTCCTCCGAGGTGCATGTACACAGCTCAGCTTGTGGGAACATTGGTGTCTGGCGTTGTGAACCTTGCAGTAGCATGGTGGATGCTGGAAAG CATAACCGACATTTGTGACATCGAAGGAACACATCCGGACAGTCCCTGGACGTGTCCCAAGTACCGTGTCACATTCGACGCATCTGTCATCTGGGGATTG ATCGGACCAAGCCGCCTGTTTGGTCCAGGAGGGCTGTACCGAAACTTGGTTTGGTTGTTCCTAATCGGAGCTATCCTGCCGGTACCAATCTGGGTACTAA GCAAAGTATACCCAGACAAGAAATGGATTGCACTGATCAACATACCCGTCATATCCTATGGTTTCGCTGGAATGCCGCCTGCAACTCCAACAAACATTGC AAGCTGGCTCATCACTGGGATGATCTTCAACTACTTCGTGTTCAAGTACCACAAACGCTGGTGGCAGAAGTACAATTACGTCCTATCGGCAGCACTCGAT GCAGGGACAGCATTCATGGGTGTGCTGCTGTTCTTCGCCCTGCAGAATTCGGGTCACAATTTAAAATGGTGGGGAACAAAGCTTGATCATTGCCCTCTGG CTACCTGTCCTACCTTGCCGGGGATCGCAGTCAAAGGATGCCCTGTTCCCAAATGA
AA sequence Show only first row Show all	>Lus10038784 pacid=23150296 polypeptide=Lus10038784 locus=Lus10038784.g ID=Lus10038784.BGIv1.0 annot-version=v1.0 MPTKPEPGTQPTRTQIQLPKQSDPDSEPHERCPVEEVALVVPETDDPSLPVMTFRAWSLGLICCTLLIFLNTFFTYRTQPLVISAILMQIAVLPIGKFMA RALPTRDFNFFGLWKFSLNPGPFNMKEHVIITVFANCGVSMGGGDAYSIGAITVMKAYYKQSLSFLCALFIVLTTQVLGYGWAGMLRRYLVDPVEMWWPS NLAQVSLFRALHEKEVKNKGPTRMQFFLIALTISFLYYALPGYLFPILTFFSWVCWAWPNSITAQQIGSGYHGLGLGAFTLDWAGITAYHGSPLVTPWTS IVNVGVGFIMFIYIVVPVCYWKFNTFDARKFPIFSNQLFTTTGSKYDTTKILTPNFDLNVDAYNSYGKLYLSPLFALSIGSGFARFTATIVHVALFHGSD IWRQSRSAMKNNMKLDVHAKLMKAYKQVPEWWFMILLGGSIVLSLMMSFIWKADVQLPWWGMIFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYV LPGKPIANLLFKIYGRISTVHALSFLSDLKLGHYMKIPPRCMYTAQLVGTLVSGVVNLAVAWWMLESITDICDIEGTHPDSPWTCPKYRVTFDASVIWGL IGPSRLFGPGGLYRNLVWLFLIGAILPVPIWVLSKVYPDKKWIALINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFKYHKRWWQKYNYVLSAALD AGTAFMGVLLFFALQNSGHNLKWWGTKLDHCPLATCPTLPGIAVKGCPVPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	0	1
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	3.5	0.8779
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	3.9	0.8933
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	4.2	0.8893
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	4.9	0.8713
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	4.9	0.8876
AT5G22090			Protein of unknown function (D...		Lus10004098 [exp]	4.9	0.8638
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	5.3	0.8711
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	6.7	0.8625
AT4G16360			5'-AMP-activated protein kinas...		Lus10006390 [exp]	6.9	0.8567
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	8.1	0.8748

Compare expression of checked genes

Lus10038784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.