Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 66 / 6e-13 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G49420 54 / 6e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G51090 46 / 2e-06 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039073 [exp] 112 / 6e-31 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10001913 [exp] 80 / 7e-18 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10000039 [exp] 75 / 1e-16 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019200 [exp] 79 / 3e-18 AT4G16380 86 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019300 [exp] 77 / 8e-17 AT4G16380 94 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019100 [exp] 77 / 1e-16 AT4G16380 59 / 8e-10 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018400 [exp] 72 / 9e-16 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018901 [exp] 72 / 1e-15 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006700 [exp] 69 / 2e-14 AT4G16380 45 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019500 [exp] 68 / 5e-14 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019800 [exp] 64 / 2e-12 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 63 / 2e-12 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020500 [exp] 61 / 1e-11 AT4G16380 73 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10038786 pacid=23150310 polypeptide=Lus10038786 locus=Lus10038786.g ID=Lus10038786.BGIv1.0 annot-version=v1.0 ATGGGAGGAGAATCAAAGCTCACCACTATGGTGATCAAGGTGGATCTGGACTGCGACAAGTGCCGCAAGAAGATCAAGAAAGTCCTCTGCAAAATCCCTC AGATTCAGAACCAAGTGTACGACGAGAAGGCGAATTTGGTGACGATCACAGTATGGTGCTGCAGCCCTGAGAAGGTGAAAGACAAGATTTGCTGCAAAGG CGGAGAGTCGGTGAAGGGAATCGAGATCGTCAAACCACCGCCGCCGGAGAAGCCCAAGGAGAAGCCGAAGGTGCCGGAAAAGCCCAAAGAGCCGGAGAAG GCTAAGGAGAAGCCCAAGGAGCCGGAAAAGCCGAAGGAAAAGCCCAAAGAGAAGCCGAAGGAACCAGAGGGGAAATCCAAGGAGAAGCAGCAAGAGGCGG CGCCAAAGAAGCCGGCTGCTGCTGAACCGGAGAAGCCGAAGGATAAGCCTGCACCGAAACAGGGTGTGTTTGTTGAGCCGGAGAAACCCAAACAGCCTGC CGCTCCTAAGCCGTCGTACGGACGGCCGGTGTACGACAACTGGGGCGGCGGCGGCGGATATTACTGCCCGCCGGGAGCGTACAGGAAGCAGCCTGGGCAG TGCTTCAGCGACGATAATACTTCGGGTTGCGTCGTCATGTAA
AA sequence Show only first row Show all	>Lus10038786 pacid=23150310 polypeptide=Lus10038786 locus=Lus10038786.g ID=Lus10038786.BGIv1.0 annot-version=v1.0 MGGESKLTTMVIKVDLDCDKCRKKIKKVLCKIPQIQNQVYDEKANLVTITVWCCSPEKVKDKICCKGGESVKGIEIVKPPPPEKPKEKPKVPEKPKEPEK AKEKPKEPEKPKEKPKEKPKEPEGKSKEKQQEAAPKKPAAAEPEKPKDKPAPKQGVFVEPEKPKQPAAPKPSYGRPVYDNWGGGGGYYCPPGAYRKQPGQ CFSDDNTSGCVVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	0	1
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	6.2	0.8305
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	6.3	0.8223
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	8.1	0.8027
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	12.0	0.7635
AT5G62440			Protein of unknown function (D...		Lus10002053 [exp]	14.1	0.8056
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	15.9	0.7877
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	17.1	0.8141
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	17.7	0.7868
AT4G21215			unknown protein		Lus10006757 [exp]	19.4	0.7925
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	19.9	0.7649

Compare expression of checked genes

Lus10038786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.