Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27285 214 / 2e-67 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT2G27280 192 / 4e-58 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT1G55928 171 / 5e-51 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039072 [exp] 516 / 0 AT2G27285 224 / 3e-71 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10020557 [exp] 424 / 3e-150 AT2G27285 240 / 5e-78 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10009414 [exp] 167 / 1e-50 AT2G27285 110 / 7e-29 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162500 [exp] 261 / 1e-85 AT2G27285 215 / 5e-68 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Potri.004G201300 [exp] 143 / 9e-41 AT2G27285 105 / 2e-26 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09745 [flax] [poplar] DUF2040 Coiled-coil domain-containing protein 55 (DUF2040)
Representative CDS sequence Show only first row Show all	>Lus10038787 pacid=23150394 polypeptide=Lus10038787 locus=Lus10038787.g ID=Lus10038787.BGIv1.0 annot-version=v1.0 ATGAAGAAGTACGGTTTACAGCTGAGAGTGCAGCCGTCCCAGAATAAAAAACCACCCAGGCCACCTCCTCCAAAGCTCCTAGGGTTCATGAACGATGGTG ATGAAGATGAGGATAATGTCGAGCGAGACATTGCACGTCAGGCTACCAAGAAAAAGTCTCTCAAGGATATCGAGGAGCAGCATAAGAAAGCATTGGAGGA AGACCCCTCTGTGTTTGATTATGATGGAGTATACGATGAGATGAAGCAGGCAATTGTTCGTCCACGGATTGTAGATAAGGAACAGAAAAAGTCTAAGTAT ATCGAGACTCTGAAAGCGAAAGCTATAGAACGGCAACGCCAACAGGAGATCGTGTATGAACGAAAAATTGCTAAAGAGAGAAGCATAGATGACCATCTGT ATGCTGACAGGGATAAATATGTCACAAATGCCTACAAGAGGCAACTAGCTGAACATAACCAGTTGCTGGAAAAAGAAAAGCTCCTTGAACTCAAAGAGCA GAAAGACGATGTTACCAAGAAGAGTGATCTGAGCGACTTCTACTTCAACCTCAACAAGAATGTTGCTTATGGTGGTAAAGATGCGGAGATGAGGAGGCGA GAGAAGCAGGCCGAATCTAAGAAGGTAGAGAAGCAGGATAGTGAGGAAGTATCAGCAGGAGGATCAAAGGCAACAACACCATCAGCGCTACCTGACTCCA CAAAAGCATCGGTATCTTCTTCACTAGCTAACGATAAGATACTACAAGACCATGATCCTCGAAGGCATGGCGAATCTCCAGATCCGAAGCCAGAATCTGA TAAGCCTGTCTCGGAGCCTTCAGCTATGGAGAATCAGCCGCCAGCTGCAAAGGAAGCTAATCCTGACCATTTGAAGAGAAAGGAAGATGCAATCAATGCA GCAAAAGAGCGCATGTTGGCACGTAAGAGAGCAAAGCTACAGCAGCAACTAGAGATGTAG
AA sequence Show only first row Show all	>Lus10038787 pacid=23150394 polypeptide=Lus10038787 locus=Lus10038787.g ID=Lus10038787.BGIv1.0 annot-version=v1.0 MKKYGLQLRVQPSQNKKPPRPPPPKLLGFMNDGDEDEDNVERDIARQATKKKSLKDIEEQHKKALEEDPSVFDYDGVYDEMKQAIVRPRIVDKEQKKSKY IETLKAKAIERQRQQEIVYERKIAKERSIDDHLYADRDKYVTNAYKRQLAEHNQLLEKEKLLELKEQKDDVTKKSDLSDFYFNLNKNVAYGGKDAEMRRR EKQAESKKVEKQDSEEVSAGGSKATTPSALPDSTKASVSSSLANDKILQDHDPRRHGESPDPKPESDKPVSEPSAMENQPPAAKEANPDHLKRKEDAINA AKERMLARKRAKLQQQLEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	0	1
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	7.2	0.8732
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	9.8	0.8550
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	10.7	0.8373
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	12.0	0.8213
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10007794 [exp]	12.7	0.8163
AT3G12760			unknown protein		Lus10009599 [exp]	13.8	0.8160
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	14.7	0.8309
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	15.9	0.8671
AT2G30530			unknown protein		Lus10034444 [exp]	17.2	0.7882
AT1G71790			Subunits of heterodimeric acti...		Lus10003086 [exp]	18.2	0.8299

Compare expression of checked genes

Lus10038787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.