Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16390 788 / 0 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT5G46580 421 / 6e-138 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G31400 174 / 2e-45 GUN1 genomes uncoupled 1 (.1) AT1G74750 165 / 2e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 164 / 4e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74850 160 / 1e-40 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G02860 153 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 146 / 2e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 139 / 3e-34 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 138 / 4e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039071 [exp] 1351 / 0 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004555 [exp] 413 / 1e-134 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 409 / 6e-133 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022290 [exp] 160 / 3e-41 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10003657 [exp] 160 / 3e-41 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10033127 [exp] 159 / 2e-40 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 158 / 4e-40 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 156 / 2e-39 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10002107 [exp] 155 / 3e-39 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006800 [exp] 878 / 0 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G019000 [exp] 838 / 0 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G018600 [exp] 729 / 0 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G089600 [exp] 422 / 3e-138 AT5G46580 986 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G193900 [exp] 162 / 1e-41 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G066400 [exp] 160 / 6e-41 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.014G118500 [exp] 160 / 1e-40 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.005G050500 [exp] 155 / 1e-39 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 150 / 3e-38 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 149 / 9e-38 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038788 pacid=23150602 polypeptide=Lus10038788 locus=Lus10038788.g ID=Lus10038788.BGIv1.0 annot-version=v1.0 ATGGCGTACAGTCTCTGCGCTTCATCTTCTTTCCATCAAACTCTCTGCAACTCCTTCTCTTCTCCTTCTTCCAGAGACCACAAACCAAGGTCTTTATTCA AGCTCCCAACTTTCTCATCACCTCAATCAAAAACTTCCCTGCTGCATTTCGCCGCTCAAGTCTCTTTACAGGACTCCGTCGCGCAGCAGTCGTTGAAAGA GGATAACCCCAATGGAAAATCTCCTTCTCCCGCCAAATCCTTCGTTTGGGTCAATCCCAAAAGCCCCCGAGCTACTGAGCTACGCTTCCAATCTTACGAT GCTAGGTATGCTTCTCTTGTTAAAACGGCCCAGACTTTGGATTCTTGTTCGGCGGACGACACCCAAGTTCGATCCGTTTTGAACGGCCTGGGATATCAGT TTTCGGAGCAAGGCGCCGTCGTTGTAATTAACAACATGACCAACGCCGATACGGCTTTGATTGCCCTCAGGTATTTTGTCGACAACTTGAAGTTCAAACG CCCGGAGGTTCTTTACAATGTCACGATGAAAATATTGAGGAATTGTAGGAGAATAAGTGATGCCGAGAAGCTGTTCGATGAAATGCTTCAGAGAGGGGTT GCCCCAGATAACGTCACTTTTTCCACGATAATTAGCTGCGCTAAGATGTGTAGGCTGTCCGACAAGGTTGTGGACTGGTTTGAGAAAATGACTAGTTACG GGGTTACCCCGGATGAACTTACGAATTGTACCATGATTGAAGCTTATGGCCGAGCTGGCGATATGGAGAAGGCCCTGAGCTTGTATGATCGCGCTAGAAC CGAGAAATGGAAACTTAATGCTGTCACATTCGCGACGGTGATTAGGATATATGGTATGTCGGGGAATTATGATGGGTGCTTGAATGTTTACGAAGAAATG AAGGCTCTTGGTGTTGAGCCTAATGTATTCACCTTTAACGCCTTATTGGATTCTATGGGGAGAGCAAAAAGACCTTGGACAGTCAAGACAATCTACAATG ATATGATCCATAAGGGACTTACCCCGAATTTTCTGACCCATGCAGCACTTCTCCGTGGTTATAGTAGAGCTCGATACGGCGAGGATGCTCTCGCTGTGTA TAGGGAGATGAAGGGTCAAGCTATGAATTTGAATGTAGTGCTGTACAATACCTTGTTCTCCATGTGTGCTGATCTCGGCCTCGTTGATGAGGCTACCGAG ATTTTTGAGGACATGAGAAGCTCTGGGGTAGAGCCTGATGATTGGACTTTCTCATCTTTGATTACCGCATTCTCGAGTTGTGGTAGACTTTCTGAGTTGG AGAATATACTAAATGCAATGGAGGAAGCTGGGATTGAGCCTAATCTTTTCATGTTCACCTCAATTACTCAGTGCTATGGGAGAGCCGAACGAATTGATGA TGTTGTGAGGACTGTCGACAGACTTTTCGAAATGGGAATATCGCCTGATGACAGGTACTGTGGGTGTCTTCTTTCCCTGGTCGCTCAAACTCCAAAAGAG GAAGTTAGTAAACTTGTTGAATGCGTTGAGAGGGGTCATCCCAAACTTGGTTCTGTGGTAAAGCACCTGCTACAAGAACAGCAGGGCAATGAGGTGCACT TTAAGGAACAAGTTGCTGAGCTATTCAGCAATTTTGATGCTGAAGTAAAGAAAGTTTATTGCAATGGCTTAATCGATCTCTGCGTCAAATTCAACATGCG TGAAAGAGCTAACGAGTTGCTAGACCTGGGAGTAAAGCTGGATTTCTTTCACGAGCTACAGTCGAGGTCCCCAATTCAGTGGTCTCTACAATTAAAGGGT CTATCACTTGGAGCAGGTCTGACAGCTCTAGATGTTTGGATAAATGATTTGTCCAAGGCAATCGAATCTGGAGAACAGCTCCCACCTCTACTCGGAATCA ATACCGGGCACGGAAAACACAGTAACTCAGACAAGCACAAGGGCTTAGCCGCTCTGCTCGATTCGCGCTTGAAGGAATTGAAATCCCCTTTCCATGACGA TCCTGATAAATCTGGTTGGTTTTTTACCACAAAGGTTGCTGCTGAGGCATGGTTGGAAGCCATGGCTACTGCCAAGGTGTAG
AA sequence Show only first row Show all	>Lus10038788 pacid=23150602 polypeptide=Lus10038788 locus=Lus10038788.g ID=Lus10038788.BGIv1.0 annot-version=v1.0 MAYSLCASSSFHQTLCNSFSSPSSRDHKPRSLFKLPTFSSPQSKTSLLHFAAQVSLQDSVAQQSLKEDNPNGKSPSPAKSFVWVNPKSPRATELRFQSYD ARYASLVKTAQTLDSCSADDTQVRSVLNGLGYQFSEQGAVVVINNMTNADTALIALRYFVDNLKFKRPEVLYNVTMKILRNCRRISDAEKLFDEMLQRGV APDNVTFSTIISCAKMCRLSDKVVDWFEKMTSYGVTPDELTNCTMIEAYGRAGDMEKALSLYDRARTEKWKLNAVTFATVIRIYGMSGNYDGCLNVYEEM KALGVEPNVFTFNALLDSMGRAKRPWTVKTIYNDMIHKGLTPNFLTHAALLRGYSRARYGEDALAVYREMKGQAMNLNVVLYNTLFSMCADLGLVDEATE IFEDMRSSGVEPDDWTFSSLITAFSSCGRLSELENILNAMEEAGIEPNLFMFTSITQCYGRAERIDDVVRTVDRLFEMGISPDDRYCGCLLSLVAQTPKE EVSKLVECVERGHPKLGSVVKHLLQEQQGNEVHFKEQVAELFSNFDAEVKKVYCNGLIDLCVKFNMRERANELLDLGVKLDFFHELQSRSPIQWSLQLKG LSLGAGLTALDVWINDLSKAIESGEQLPPLLGINTGHGKHSNSDKHKGLAALLDSRLKELKSPFHDDPDKSGWFFTTKVAAEAWLEAMATAKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	0	1
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	1.0	0.9696
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10039091 [exp]	2.0	0.9526
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	3.2	0.9579
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	3.5	0.9556
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	5.3	0.9460
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	5.5	0.9525
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	6.9	0.9291
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	6.9	0.9495
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	8.5	0.9335
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	8.9	0.9266

Compare expression of checked genes

Lus10038788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.