Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17220 442 / 1e-150 ATMAP70-5 microtubule-associated proteins 70-5 (.1) AT1G24764 433 / 1e-145 ATMAP70-2 microtubule-associated proteins 70-2 (.1) AT1G68060 428 / 7e-144 ATMAP70-1 microtubule-associated proteins 70-1 (.1) AT2G01750 416 / 3e-139 ATMAP70-3 microtubule-associated proteins 70-3 (.1.2) AT1G14840 411 / 2e-137 ATMAP70-4 microtubule-associated proteins 70-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013238 [exp] 418 / 6e-140 AT1G24764 910 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10030758 [exp] 416 / 5e-139 AT1G24764 918 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10019171 [exp] 288 / 7e-92 AT1G24764 546 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10000642 [exp] 210 / 7e-63 AT1G24764 403 / 1e-136 microtubule-associated proteins 70-2 (.1) Lus10039069 [exp] 160 / 2e-47 AT1G24764 71 / 8e-16 microtubule-associated proteins 70-2 (.1) Lus10003908 [exp] 96 / 7e-24 AT4G17220 98 / 3e-25 microtubule-associated proteins 70-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G018000 [exp] 560 / 0 AT4G17220 464 / 5e-159 microtubule-associated proteins 70-5 (.1) Potri.016G006900 [exp] 545 / 0 AT4G17220 453 / 1e-154 microtubule-associated proteins 70-5 (.1) Potri.010G106100 [exp] 436 / 4e-147 AT1G68060 751 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.008G135100 [exp] 434 / 2e-146 AT1G24764 804 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.016G036300 [exp] 423 / 5e-142 AT1G68060 619 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.006G039200 [exp] 422 / 1e-141 AT1G24764 648 / 0.0 microtubule-associated proteins 70-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07058 [flax] [poplar] MAP70 Microtubule-associated protein 70
Representative CDS sequence Show only first row Show all	>Lus10038790 pacid=23150540 polypeptide=Lus10038790 locus=Lus10038790.g ID=Lus10038790.BGIv1.0 annot-version=v1.0 ATGGTGGGTTTTGAAGAACAAGTTGCTGGAGTTAGAGGTGGCTCTGAAGAAGAGCCCATCCTTACTCACCCTGACCCTGTTATCCTGGAGTTCAACCGCT TGCAGAACCTCCTCACAGATAAGGATAGAGAATTGGGAGCTGCTCAGGGAGAAATCAAAGGTTTGAGAACAAATGATGCACTCAAGGACAAGGCAATAGA AGAGCTGAGGATTCAGATGAACAAACTTGATGAGAAGTTGCGCGCTTCCGAGAGTATGATCGAGAACAAGAACCTTGAAATCAAGAAGATAGAGAATGGA AAGAGAGAGGCTTTGTCAGCACAATTTGCATCTGAAGCAACTCTGAGAAGGGTTCATGCTAATCAAAGGGATGATGATTTCCCTTCAATTGAATCTTTCA TTGCTCCCCTCGAGGCCGAGATTAAGATGTACAAGAAGGAGGTTGCAGCATTGCTGGAAGACATGAAGGCAATGGAGCGACTCACCAAGTCGAAGGAAGT AGCTCTCGTCGAAGCCGAGTCTATCCTGAAGAGTGCCCTCGAAAGGGCTTTGATAGTTGAGGAAGTTCAGAACCAAAACTATGAACTAAGAAGACAAATT GAGATTTTCCAGGAAGAGAGCAGGATTCTCGAGAAAACAAACCGGCAGAAGGTTGCAGAGGTCGAGAAGCTGAGTCAAACCATTAAAGAGCTTGAGGAGG CTGTTTTAGCCAGTGGAGCTGCAGCAAATGCAGTTAGGGACTACAAGCGACAGATTACTGAACTAAACGAAGAGAAGAAAATGCTGGAAAGGGAGCTTGC TAGAGCTAACGTATCGGCGAACCGTGTGGCAACCATGGTGGCGAATGAATGGAAAGATGAGAATGACAAGGTGATGCCAGTCAAGCAATGGCTGGAACAG AGAAGGATCATGCAGGCAGAGATGCAAAGACTGAAGGATAAGCTTGCTATTACGGAAAGAACAGCCAAGGCAGAATCACAACTAAAGGACAAATTCAAAC TTAGGCTGACAACATTGGAAGAAGGATTAAAGCACACATCCCGAAAGCAGAACAAACATGGTAGCATCTTAGGGTTCTTAACAAGCAAAAGCGAACAGAA GTCAATCGAGAACACGACGAGGAAGAGTTTCTGGGCAGCAAGAAGCAGTGGGAAGGAAAATGCAGAAGGGAAAGCAAATGCAGATACCAATGCTGACAAG AACATGAAGGATAATATGTATACAACATTAATTGCAGCAGCTGACGAAGAAGTGCACGAGAAGGGAATAAGTACGAATCCTGGGGATGAGGATGATGTGG TTTCAGGGTTTCTGTATGATAAAATTCAAAAAGAGGCGACAAGTTTAAGGAGAGCTTGTGAGGTCAAGGATGACAGTTTGAATGCTAAGGATCAACAAAT CCAGATGCTGATGAGGAAGGTTGATTCCTTGACAAAATCCATTGAAGTAGAGGCTAGGAAACAGAAGAGGCAAGCAGGAGCTAAAGAGAAGGAAACTGGA CAGGTAAAGGCCGATGGAAGCAAAAAGACTGCTGCATCTGCATGTGATGTCAGTTTTCTAAAGAGATTCATCCCAGCTGAGAAGAGGGCAGCTGGAATTG GTCCGAACTCTGCTCGTTCTTGA
AA sequence Show only first row Show all	>Lus10038790 pacid=23150540 polypeptide=Lus10038790 locus=Lus10038790.g ID=Lus10038790.BGIv1.0 annot-version=v1.0 MVGFEEQVAGVRGGSEEEPILTHPDPVILEFNRLQNLLTDKDRELGAAQGEIKGLRTNDALKDKAIEELRIQMNKLDEKLRASESMIENKNLEIKKIENG KREALSAQFASEATLRRVHANQRDDDFPSIESFIAPLEAEIKMYKKEVAALLEDMKAMERLTKSKEVALVEAESILKSALERALIVEEVQNQNYELRRQI EIFQEESRILEKTNRQKVAEVEKLSQTIKELEEAVLASGAAANAVRDYKRQITELNEEKKMLERELARANVSANRVATMVANEWKDENDKVMPVKQWLEQ RRIMQAEMQRLKDKLAITERTAKAESQLKDKFKLRLTTLEEGLKHTSRKQNKHGSILGFLTSKSEQKSIENTTRKSFWAARSSGKENAEGKANADTNADK NMKDNMYTTLIAAADEEVHEKGISTNPGDEDDVVSGFLYDKIQKEATSLRRACEVKDDSLNAKDQQIQMLMRKVDSLTKSIEVEARKQKRQAGAKEKETG QVKADGSKKTAASACDVSFLKRFIPAEKRAAGIGPNSARS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	0	1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	1.0	0.9870
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	2.0	0.9731
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	2.4	0.9835
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	2.8	0.9621
					Lus10025505 [exp]	3.7	0.9627
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	3.9	0.9737
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	7.7	0.9656
AT2G22660			Protein of unknown function (d...		Lus10004273 [exp]	9.2	0.9467
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	9.2	0.9520
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	9.2	0.9691

Compare expression of checked genes

Lus10038790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.