Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16400 77 / 2e-18 unknown protein AT3G13175 53 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039068 [exp] 225 / 6e-78 AT4G16400 81 / 7e-20 unknown protein Lus10016614 [exp] 64 / 2e-14 AT4G16400 86 / 8e-22 unknown protein Lus10004418 [exp] 60 / 1e-12 AT4G16400 79 / 3e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017900 [exp] 92 / 1e-25 AT4G16400 85 / 1e-21 unknown protein Potri.016G007101 [exp] 91 / 3e-25 AT4G16400 96 / 3e-26 unknown protein Potri.001G366900 [exp] 65 / 1e-14 AT3G13175 75 / 4e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038791 pacid=23150346 polypeptide=Lus10038791 locus=Lus10038791.g ID=Lus10038791.BGIv1.0 annot-version=v1.0 ATGTCTAATTCACACAGCAACAAACAAAACCAATCAGGAGCAGCCATGGAGAACTTTGCAGAGAAGATGGTGATGCAATACAGATGCCATATTGCCGTTG CAGCCATTGGTTGTATTCTGCTTCCTTTGATGTTGTACGCAGCTCCAAGGATGCTCACCATCCTTGCATACTTCTGGCCTCTCATGGCTTCCACGGCTGT GTTCTTGGTCCTCATCATGGGATTCGGTGGCGTCTCGAGACTCACTAACGATTACGCGGCCGATCAGCTTCATCAGCTTGGTGGCCAGAGTACTCCAGGG CAGGGCATCATCGATTATGTTGCTGGAGGTCCTGATTATGCTTATGAATGA
AA sequence Show only first row Show all	>Lus10038791 pacid=23150346 polypeptide=Lus10038791 locus=Lus10038791.g ID=Lus10038791.BGIv1.0 annot-version=v1.0 MSNSHSNKQNQSGAAMENFAEKMVMQYRCHIAVAAIGCILLPLMLYAAPRMLTILAYFWPLMASTAVFLVLIMGFGGVSRLTNDYAADQLHQLGGQSTPG QGIIDYVAGGPDYAYE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16400			unknown protein		Lus10038791 [exp]	0	1
AT4G37445			unknown protein		Lus10001408 [exp]	1.4	0.9829
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	2.0	0.9636
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	2.4	0.9702
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10023624 [exp]	3.5	0.9546
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	3.7	0.9707
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10006084 [exp]	4.7	0.9563
					Lus10019472 [exp]	7.0	0.9603
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	8.1	0.9532
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	8.1	0.9631
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	9.8	0.9606

Compare expression of checked genes

Lus10038791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.