Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13130 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039066 [exp] 78 / 5e-17 AT3G13130 61 / 3e-11 unknown protein Lus10016611 [exp] 48 / 1e-06 AT3G13130 62 / 1e-11 unknown protein Lus10004415 [exp] 48 / 2e-06 AT3G13130 54 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007400 [exp] 52 / 4e-08 AT3G13130 60 / 4e-11 unknown protein Potri.014G166900 [exp] 42 / 0.0001 AT2G04515 52 / 1e-08 unknown protein Potri.001G366500 [exp] 40 / 0.0007 AT3G13130 64 / 5e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10038793 pacid=23150466 polypeptide=Lus10038793 locus=Lus10038793.g ID=Lus10038793.BGIv1.0 annot-version=v1.0 ATGGATACAGAAACCCAAGTTGACCAAATGCAAAATCTCCCAGCAGCTTTGTTGAATAGCAGCAGCAGCAGCATCAGCATGAAGCTGTACCGTTGTAATT ACTTGTTGAATAAAAGGAGTTTACAGCTTGTGATTACACTCTCCCTCTTTTCTCTCCTCATCTGCCTCTCTTCCATTGGCAACAGTAGTAGGTATGTTGT TGTTTACTTGAATCCATTGTTTACACGTAGTCTGGAGAGGAAGTACATGTTCCTCATCTGCAATGCCATCCTTGCTTTCCTCGCCACTACCTCCGCCACC AGGAAAACCACCACCGCCTCAACAGCTTCTGATGATCATTATCGTGAGTATGATGCGGTCAATTCAGTTGGATGTGAGGATACTGCAATGTTTGAAGGTG CTTCTGACGAGGAAACAGAAGGAAGAGGCGAGCTTGGTGAAGAAGGAGATGAAGATGATAATGGAAGTAATGATGATGATGATGTGGATGAGGTTGGGGA TGAAGAGTGTGGTAAGTATAATGCTGAATTTGAGGAAGAAGGAAAAGAAGAAGGGAGATTGGAAATGGAGGTAAAGGAAGAAGGAGGGAAGAGTGAAGAG ATGGTGGGATATAGCACTGAGGAGTTGAACAGAAAGATTGAAGATTTCATCAGGAAGATGAAACAAGAAATGAGGATTGAGTCTCAACAGCCACTTGTAA CTGCTGCCTAA
AA sequence Show only first row Show all	>Lus10038793 pacid=23150466 polypeptide=Lus10038793 locus=Lus10038793.g ID=Lus10038793.BGIv1.0 annot-version=v1.0 MDTETQVDQMQNLPAALLNSSSSSISMKLYRCNYLLNKRSLQLVITLSLFSLLICLSSIGNSSRYVVVYLNPLFTRSLERKYMFLICNAILAFLATTSAT RKTTTASTASDDHYREYDAVNSVGCEDTAMFEGASDEETEGRGELGEEGDEDDNGSNDDDDVDEVGDEECGKYNAEFEEEGKEEGRLEMEVKEEGGKSEE MVGYSTEELNRKIEDFIRKMKQEMRIESQQPLVTAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13130			unknown protein		Lus10038793 [exp]	0	1
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10022322 [exp]	2.4	0.9555
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	2.6	0.9645
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	4.6	0.9549
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	6.5	0.9258
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10007625 [exp]	6.9	0.9173
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	6.9	0.9542
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	8.1	0.9490
AT5G07330			unknown protein		Lus10018040 [exp]	8.7	0.9126
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	8.8	0.9445
AT2G15320			Leucine-rich repeat (LRR) fami...		Lus10002822 [exp]	9.5	0.9224

Compare expression of checked genes

Lus10038793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.