Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02660 618 / 0 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039064 [exp] 898 / 0 AT3G02660 666 / 0.0 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140400 [exp] 674 / 0 AT3G02660 664 / 0.0 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y) CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Lus10038795 pacid=23150315 polypeptide=Lus10038795 locus=Lus10038795.g ID=Lus10038795.BGIv1.0 annot-version=v1.0 ATGGCGGCGATAGCGGTTGTTCCCCGGACGTTGCTCTATTCCTTCCACCGCCATAGATTTTCCTTCACGCTACCTGTCTTCTTCGATCTCCACACCGGCA GCACTAGGTTGAGGTCCCCGGTCGGCGTCGTCAAGCCTCGGTTCACGACAACGATCAGTTGCGTCCAATCCGCCGAAGTAGCTCCCTTTGCAGCAATCGA CCGCCGCAATGTCATCGACATTTTGGAAGAAAGAGGATTGATGGAATCCCTCACTAGCGACAATCTCAGGTCTGCTTCTTCCTCCACTCCAAACTCATCT CCTCCGCTTAGGGTTTACTGCGGCTTCGATCCCACCGCCGAGAGCTTGCACTTAGGAAACCTTCTCGGAATCATAGTCCTCTCCTGGTTCCACCGCTGCG GCCATAACGTCGTCGCCCTGATAGGCGGCGCCACCGCTCGAATCGGCGATCCGTCCGGGAAGAGCATCGAGCGTCCTGAGCTGGATGTGGAAGCTCTGGA GAGGAACATTTTAGGGATAGACAATACGGTCACTAGGATCCTGAATTCGAGTAATTTATCATCATCGTCGTCGTCGCCTTCGTTTGTGGTTATGAACAAC TACGATTGGTGGAAGGAATTTAGGCTATTGGATTTTCTGAAGCAGGTAGGGAGATACGCTAGGGTTGGAACCATGATTGCTAAAGAGAGTGTGAAAAAGA GGCTTGATTCAGAGCAAGGAATGAGCTACACTGAGTTCACTTATCAGCTGTTGCAGGGTTACGATTTCCTTTACCTGTTTCAAAACCATGGCGTGAATGT TCAGATTGGTGGGAGTGATCAATGGGGAAATATTACTGCTGGAACTGATCTCATCAGGAAAATCCTCCAGCCTCCAGAAGGCGGTGGAGGGTTCGGCTTG ACATTCCCTCTTCTGCTAAAGAGCGACGGCACCAAATTTGGGAAATCTGAAGATGGTGCCATTTGGCTATCACCTTCTATGTTGTCACCTTACAAATTTT ACCAGCATTTGTTCTCAGTTCCTGATTGCGACGTGATCAAGTTTCTCAAGATGCTGACTTTCTTGGACATGGCGACAATAGAGGAGTTGGAAGCCCAAAT GCAGAGACCTGGCTCTGGCTACTTGCCTAACACTGCTCAGAAACTGCTGGCTGAAGAGGTGACAAGATTCGTCCATGGAGAAGACGGTGTTCGAGAGGCT CTGAAGGCTACCGAGGCGCTGAGGCCCGGAGCAGAGACGAAGCTGGATTGGAAGACGATCGAAGCCATTGCTGAGGATGTGCCTTCGTGTTCTATGGCGT ATGATCAGGTTGTGGAGCTGTTTGTTGTTGACCTCTCTGTTTCGTCCGGTCTGCTCGAGAGCAAATCGGCAGCTCGGAGATTGATGAAGCAAGGTGGGAT CTACTTGAACAACAACAGAGTTGACCAGGAGAGTAGAAAGATTGAGGCGGAAGATGTAGTGGACGGGAAGCTTCTGCTATTATCTGCAGGGAAGAAGAAC AAGGTCGTTGTTCGCATATCCTGA
AA sequence Show only first row Show all	>Lus10038795 pacid=23150315 polypeptide=Lus10038795 locus=Lus10038795.g ID=Lus10038795.BGIv1.0 annot-version=v1.0 MAAIAVVPRTLLYSFHRHRFSFTLPVFFDLHTGSTRLRSPVGVVKPRFTTTISCVQSAEVAPFAAIDRRNVIDILEERGLMESLTSDNLRSASSSTPNSS PPLRVYCGFDPTAESLHLGNLLGIIVLSWFHRCGHNVVALIGGATARIGDPSGKSIERPELDVEALERNILGIDNTVTRILNSSNLSSSSSSPSFVVMNN YDWWKEFRLLDFLKQVGRYARVGTMIAKESVKKRLDSEQGMSYTEFTYQLLQGYDFLYLFQNHGVNVQIGGSDQWGNITAGTDLIRKILQPPEGGGGFGL TFPLLLKSDGTKFGKSEDGAIWLSPSMLSPYKFYQHLFSVPDCDVIKFLKMLTFLDMATIEELEAQMQRPGSGYLPNTAQKLLAEEVTRFVHGEDGVREA LKATEALRPGAETKLDWKTIEAIAEDVPSCSMAYDQVVELFVVDLSVSSGLLESKSAARRLMKQGGIYLNNNRVDQESRKIEAEDVVDGKLLLLSAGKKN KVVVRIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	2.6	0.8698
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	2.8	0.8459
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	3.5	0.8568
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	3.5	0.8561
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	4.2	0.8198
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	4.6	0.8188
AT2G44870			unknown protein		Lus10020395 [exp]	6.0	0.8161
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	6.6	0.8086
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	7.1	0.8315
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	11.0	0.8173

Compare expression of checked genes

Lus10038795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.