Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 330 / 1e-107 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13080 322 / 2e-104 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26310 321 / 3e-104 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48310 319 / 2e-103 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48280 314 / 1e-101 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G25120 313 / 4e-101 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25140 313 / 4e-101 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25130 310 / 6e-100 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G48270 307 / 4e-99 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26280 306 / 1e-98 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039063 [exp] 705 / 0 AT3G26300 392 / 3e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10012879 [exp] 493 / 1e-170 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10031674 [exp] 489 / 2e-169 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 410 / 7e-139 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 387 / 6e-130 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030924 [exp] 384 / 1e-128 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10042815 [exp] 379 / 2e-126 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10040120 [exp] 379 / 2e-126 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10016599 [exp] 377 / 9e-126 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074300 [exp] 388 / 3e-130 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 385 / 3e-129 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G086000 [exp] 378 / 3e-126 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.001G365100 [exp] 375 / 3e-125 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 374 / 7e-125 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 374 / 1e-124 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 372 / 5e-124 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 371 / 1e-123 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G090000 [exp] 371 / 1e-123 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.001G364600 [exp] 369 / 6e-123 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10038796 pacid=23150450 polypeptide=Lus10038796 locus=Lus10038796.g ID=Lus10038796.BGIv1.0 annot-version=v1.0 ATGGCTTTATCGAGTAGAATGTTCCTTGCTCCACGGGTTTCGGTTCCATCGAACAATCGACTTAGACTCATGATCTCCGCTGCTCCGGAAAGCGATAGCA GTTGCAGCTTTAGTAAAAGGAGGAGTGATGATGATGAGCAGGAAGTTATTTATGAGCTTCCTCCAGGGCCAATGAAACTTCCTCTGATCGGGAATTTACA CAATCTGTTGATGATTATGGGCAGCAGCAAATCGTCTCTCCCACACCACGCCCTCCGAGACATGGCCAATGAATACGGTGATCTCCTCCACCTCCAGCTC GGGGAAGTGTCGGCAGTGGTGGTTTCTTCGGCCGAGATGGCGAGGGAGGTGATGAAGACCCATGACCATGTGTTTGCCAATAGACCTCGGATTCTGGCAG TCGATATCGGAACTTGGGGTAGCCAAGACATCGCCTTCTGCCCGCTCGGCCACTACTGGAAGCAGATGAAGCGCATTTCCATTACCGACCTTCTAGGTGC TAAAAAGGTTCAATCTTTTGCGCCGATTCGTGAAGCAGAGACTGCGTTTGGTTCCCATGAAATGAAAGAAGAAGGCATAATCAACTCCATGAGAGAGGCT GCCATGGTGACCGGAGGGTTTCACGTGCTCGATTTCTACCCTTCTCTGGAGTTCTTACACGTCATCAGCGGGCTGAAATCCAGAATCCTTAAACTCAGAG ACCATAAAGATGGGATTCTGGACAGAGTCATTCAAGAACACAAACGAAAAACGACAGACCAGGATGATGAATCCGTGGACGATGAGGATTTCGTGGATGT TTTCTTAAGGCTTCAGAGGGAAGAAAGCTTGCAGTGTCCCATAACAAACACCAACATCAAGGCTGTTCTTGTGGACATGTTTGTTGCGGGTACGGACACT TCATCGGTGGTGGTAGAGTGGGCGATGTCGGAAATTATGAAGAACCCACGAGTATTGAACAAGGTGCAAAGTGAAATACGACATGCCCTGAAAGAGAAAA CGATAATTGCAGAGGAAGATATACAAGGTTTGAGTTACTTGAAATTAGTGATTAAAGAGACTTTCAGACTGCACCCGTCGATACCGCTGTTGATTCCGAG GGAAAGCAGTCGAGATTGCGTCGTTGGTGGGTACAGAATTCCTTCCGGAACTAGGGTGATCGTCAATGCTTGGGCGATCGGGAGGGACCCTGAAACGTGG GAGGATGCGGAGAGGTTTAATCCGGAGCGGTTTGACGATGGGGAAATCGATTTTAGAGGGAAGCATTTCGAGTTGATTCCGTTCGGAGCTGGAAGGAGGA TTTGTCCCGGGATTCCGTATGCGATGGCTAATATTGAGCTTCTTTTGGCAAATTTGTTGTATCATTTCGATTGGGAGCTTCCGGATGGAGTGATGGCCGA GGATTTGGATATGAGTGAGGTATTTGGACTAGCCGTTGGTAGGAAGAACCTGTTGCGTTTGGTAGCCAAGCCTTTTGACCCAGTGGTTGAAGGTAATGGG GCATACGGAGGAGCAAATGAATGA
AA sequence Show only first row Show all	>Lus10038796 pacid=23150450 polypeptide=Lus10038796 locus=Lus10038796.g ID=Lus10038796.BGIv1.0 annot-version=v1.0 MALSSRMFLAPRVSVPSNNRLRLMISAAPESDSSCSFSKRRSDDDEQEVIYELPPGPMKLPLIGNLHNLLMIMGSSKSSLPHHALRDMANEYGDLLHLQL GEVSAVVVSSAEMAREVMKTHDHVFANRPRILAVDIGTWGSQDIAFCPLGHYWKQMKRISITDLLGAKKVQSFAPIREAETAFGSHEMKEEGIINSMREA AMVTGGFHVLDFYPSLEFLHVISGLKSRILKLRDHKDGILDRVIQEHKRKTTDQDDESVDDEDFVDVFLRLQREESLQCPITNTNIKAVLVDMFVAGTDT SSVVVEWAMSEIMKNPRVLNKVQSEIRHALKEKTIIAEEDIQGLSYLKLVIKETFRLHPSIPLLIPRESSRDCVVGGYRIPSGTRVIVNAWAIGRDPETW EDAERFNPERFDDGEIDFRGKHFELIPFGAGRRICPGIPYAMANIELLLANLLYHFDWELPDGVMAEDLDMSEVFGLAVGRKNLLRLVAKPFDPVVEGNG AYGGANE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10038796 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	4.8	0.6407
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	7.9	0.6318
					Lus10027457 [exp]	10.4	0.6188
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10016782 [exp]	10.9	0.5869
					Lus10042250 [exp]	11.0	0.5910
					Lus10014650 [exp]	12.3	0.5930
AT5G16910		ATCSLD2	cellulose-synthase like D2 (.1...		Lus10012119 [exp]	13.0	0.5598
					Lus10020988 [exp]	14.7	0.5824
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	15.1	0.5871
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	19.7	0.5694

Compare expression of checked genes

Lus10038796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.