Plant FIBer expression Database

Lus10038797 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17240 216 / 4e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039062
[exp]
634 / 0 AT4G17240 255 / 3e-82 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G017200
[exp]
350 / 9e-119 AT4G17240 241 / 9e-77 unknown protein
Potri.016G008400
[exp]
323 / 3e-108 AT4G17240 222 / 2e-69 unknown protein
PFAM info
Representative CDS sequence
>Lus10038797 pacid=23150281 polypeptide=Lus10038797 locus=Lus10038797.g ID=Lus10038797.BGIv1.0 annot-version=v1.0
ATGGCGTCCCGCTACAATTCCTACGACTCCACCCGCTCTTCCGCCTCTTCATTCATCTCAGACCCCACCTCCTCCGCCGAATTCAACACCCCTTCTTCTT
CGAGAGCTCTCGTCAAATCCAAGCATTCCTCCGATCTCTCCCAATTGAAACATACTTCCGCCAAATCCAAGACTACAGCAACCCACAATCTCTCCGCGAT
GGTCAAGAAGTTCATGGAGAAGAAGAAGTCCACTCCCACTACCACCACCAACGGGTCGTCCAGGAGAAACCCACCTGGCTTCGTCATTCCGGCGGATTTG
ATCGCCGAGGACTTGAAGAAAACAGCGAGGAAAGGCGGCCCTGGGTTGGGCGGGTTGCAGAAGAAGCTGTTTGGGAAGGACAAGGAGAAGAGGCTGCAGA
AGGAAGTCAAGGCTTTGACCGAGGTCAAAGGGTGTAATGGTAATGTTGCCAACACGAGGACGCTGGCTATGGTTTTGAGGAGCGAGAGGGAGCTTCTGTG
TGCCAATAAGGAGATGGAGGCTGAGGTTTCCGAGCTCAGATCGATGCTCGAGACCAAGAACGGAGAGGTCGAGAAATTGAAGGATTTGTGTCTGAAGCAG
AGGGAGGAGATTAAATCGTTGAAGAACGCAGTGCTGTTTCCTGATGTGATGAACTCTGAGCTTCAAGATGTGCTAGAGCAGCAAGGTTCGGAGTTGAAAC
ATGCCAAGCAGATCATCCCGAGTTTACAGAGGCAGGTCACTTCTCTCACTGGCCAGTTACAGTGTCTCGCTGAGGATCTTGCTGAGGTGAAGGCTGCGAA
ATACGGAAGTGTTCGTGGTAGTAGCTCGCCAAAGACACCCTCCTACGATTGCCACGGGTCTGCCAATTCTCTGGACTTCAGCTCTTGTGGTGCTACAACG
CCAGGCAGCCCAGATGAGATGTTTGTCAAGGATCTGAATCCTTGTCTAACACCTTATGGTGCTAAACCAAAATCTAAGGAATTTGATGAGATGGGGTATG
ATTGTGATTCTTCATTCGAAGAATATCTGCCGGAGAACACGATGCACATTTCGGATGAGCTGACTTTCAGTTCCAGTCTCAGGAAGCTGTCCAGAAGCTC
AGACCGCTATCAAAGTTCCAATGCAGGGATTGCAGCGGCTAGAGCTGCTCGGAGATCGGATGAAAGCAAGTACAGACTCGGGAAGCAAATTTACCAAAGA
GTTATCTAA
AA sequence
>Lus10038797 pacid=23150281 polypeptide=Lus10038797 locus=Lus10038797.g ID=Lus10038797.BGIv1.0 annot-version=v1.0
MASRYNSYDSTRSSASSFISDPTSSAEFNTPSSSRALVKSKHSSDLSQLKHTSAKSKTTATHNLSAMVKKFMEKKKSTPTTTTNGSSRRNPPGFVIPADL
IAEDLKKTARKGGPGLGGLQKKLFGKDKEKRLQKEVKALTEVKGCNGNVANTRTLAMVLRSERELLCANKEMEAEVSELRSMLETKNGEVEKLKDLCLKQ
REEIKSLKNAVLFPDVMNSELQDVLEQQGSELKHAKQIIPSLQRQVTSLTGQLQCLAEDLAEVKAAKYGSVRGSSSPKTPSYDCHGSANSLDFSSCGATT
PGSPDEMFVKDLNPCLTPYGAKPKSKEFDEMGYDCDSSFEEYLPENTMHISDELTFSSSLRKLSRSSDRYQSSNAGIAAARAARRSDESKYRLGKQIYQR
VI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17240 unknown protein Lus10038797
[exp]
0 1
AT5G55230 ATMAP65-1 microtubule-associated protein... Lus10032567
[exp]
2.4 0.9273
AT5G23420 HMGB6 high-mobility group box 6 (.1.... Lus10013453
[exp]
3.2 0.9379
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Lus10028544
[exp]
3.9 0.9314
AT3G58650 unknown protein Lus10016854
[exp]
6.6 0.9357
AT5G58090 O-Glycosyl hydrolases family 1... Lus10028104
[exp]
7.4 0.9180
AT1G08010 GATA GATA11 GATA transcription factor 11 (... Lus10037398
[exp]
10.7 0.8692
AT4G38130 ATHDA19, ATHD1,... ARABIDOPSIS HISTONE DEACETYLAS... Lus10001605
[exp]
10.8 0.8690
AT3G56370 Leucine-rich repeat protein ki... Lus10025223
[exp]
11.8 0.9296
AT1G44900 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, ... Lus10009683
[exp]
13.6 0.9287
AT4G13690 unknown protein Lus10000756
[exp]
16.2 0.9232

Lus10038797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.