Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16440 614 / 0 ferredoxin hydrogenases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039061 [exp] 867 / 0 AT4G16440 696 / 0.0 ferredoxin hydrogenases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017000 [exp] 665 / 0 AT4G16440 722 / 0.0 ferredoxin hydrogenases (.1) Potri.016G008700 [exp] 656 / 0 AT4G16440 725 / 0.0 ferredoxin hydrogenases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02256 [flax] [poplar] Fe_hyd_SSU Iron hydrogenase small subunit PF02906 [flax] [poplar] Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038798 pacid=23150701 polypeptide=Lus10038798 locus=Lus10038798.g ID=Lus10038798.BGIv1.0 annot-version=v1.0 ATGTCGGCAAAGTTCTCACCTACGCTAAGGATTGGGGATCTCAACGATTTCATAGCTCCGTCTCAGGCTTGTGTGGTCTCTTTGAAGGGGATCAAGGCTA ATACTAATATAAAAAAGCCTGATAGACCGGAGGTTGCAGTTGGGATCAATCGGCAGTCGGAGCCGGTTAAGATTTCCCTCAAGGATTGTTTAGCATGCAG TGGATGCATAACATCAGCAGAGACGGTGATGCTCGAGAAGCAGAGTTCGGACGAATTCCTGTCTAATATTGATAAAGGAAAAGCTTTAATTGTCTCTCTT TCACCACAGTCAAGAACTTCTCTCGCTGTTCATTTTGGTCTTTCCCAACTTCAGGTCTTCAGGAAACTCACAACGTTTTTCAAGTCCTTGGGAGTAAAGG CTGTCTTTGATACAAGTTGTAGCAGAGATTTGACACTAATTGAGGCTTGTAATGAGTTTGTTAGTCGATTTAAAGAAAGCTCGTGCGAAGCTGATAGGTC TAAAGTATCGCTGCCTATGCTTTCATCTGCATGCCCAGGTTGGATTTGCTATGCTGAGAAACAACTAGGATCATATATTCTCCCTTATATATCCTCTGTC AAGAGTCCCCAGCAAACAATTGGAGCCATTATAAAGCATCATGTATGCCATAAAATGGGTCTTAGGCCGGATGATATCTACCATGTCACTGTCATGCCCT GTTATGATAAGAAGCTTGAGGCTGCAAGGGATGACTTTAGTTTTGAACTGGAAACAACAGTACCAACTAGTCACAGCGATATAAGAATTACAGAGGTAGA TTCAGTTTTGACATCTGGAGAAATTCTGGATTTGATTAAGTTGAAAGCAGTGAATTTTGTAGCCCTGGAAGAATCCCCTCTCGATAGATTGTTGACTAAT GTTGATGAACAAGAGCATCTCTATGGGGTAGGGGGCAGTTCTGGTGGTTATGCAGAGACGATTTTCCGCTATGCTGCTAAGACATTATTTGGGCGAGAAA TTGAAGGGCCACTTGAGTTCAAGACTATAAGAAATACAGATTTTCGTGAAGTATCTCTCACAGTTATGGCGTGCCCTTCAGTTATGTCCTCTTCTATTTT ATGGCTTCCCCATCCACGTCCTGTCGGTTGCTTGAATGGCGGTGGTCAAATTAAACCAACGCAGAGGCCTACTCCCAAGGAAATGAAGGAATTGCTCAGG TCGACTGAAGCCATTCACATGGAAAATGTTCGGATTGCGGAGCCACATAACAATCCTATTGTCAGAGGATTGTATGAAGAATGGCTTGGACAACCCGGTT CGGAGAAAGCTAGAAGATACATGCACACAGAGTATCATCCCCTGGTCAAGAGTATAACTGCAAAGTTACATGACTGGTAA
AA sequence Show only first row Show all	>Lus10038798 pacid=23150701 polypeptide=Lus10038798 locus=Lus10038798.g ID=Lus10038798.BGIv1.0 annot-version=v1.0 MSAKFSPTLRIGDLNDFIAPSQACVVSLKGIKANTNIKKPDRPEVAVGINRQSEPVKISLKDCLACSGCITSAETVMLEKQSSDEFLSNIDKGKALIVSL SPQSRTSLAVHFGLSQLQVFRKLTTFFKSLGVKAVFDTSCSRDLTLIEACNEFVSRFKESSCEADRSKVSLPMLSSACPGWICYAEKQLGSYILPYISSV KSPQQTIGAIIKHHVCHKMGLRPDDIYHVTVMPCYDKKLEAARDDFSFELETTVPTSHSDIRITEVDSVLTSGEILDLIKLKAVNFVALEESPLDRLLTN VDEQEHLYGVGGSSGGYAETIFRYAAKTLFGREIEGPLEFKTIRNTDFREVSLTVMACPSVMSSSILWLPHPRPVGCLNGGGQIKPTQRPTPKEMKELLR STEAIHMENVRIAEPHNNPIVRGLYEEWLGQPGSEKARRYMHTEYHPLVKSITAKLHDW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	0	1
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	1.0	0.9236
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	1.4	0.9179
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	2.2	0.8857
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	2.4	0.8992
AT3G14470			NB-ARC domain-containing disea...		Lus10039549 [exp]	2.4	0.8815
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	3.5	0.8933
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	6.7	0.8516
AT3G14750			unknown protein		Lus10038143 [exp]	8.0	0.8654
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	13.0	0.8585
AT3G45830			unknown protein		Lus10018121 [exp]	13.0	0.8764

Compare expression of checked genes

Lus10038798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.