Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26810 159 / 3e-50 SWIB/MDM2 domain superfamily protein (.1.2) AT2G37710 117 / 5e-30 RLK receptor lectin kinase (.1) AT3G53810 115 / 2e-29 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 109 / 3e-27 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 105 / 8e-26 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 100 / 8e-24 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 99 / 2e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45390 98 / 3e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT2G29220 98 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT2G43690 97 / 7e-23 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 169 / 3e-48 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 167 / 1e-47 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 166 / 2e-47 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10008597 [exp] 165 / 4e-47 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 107 / 3e-26 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 103 / 5e-25 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 103 / 5e-25 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 101 / 2e-24 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 100 / 4e-24 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137600 [exp] 170 / 2e-54 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2) Potri.006G088400 [exp] 125 / 1e-32 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 123 / 5e-32 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 123 / 5e-32 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 114 / 4e-29 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 114 / 1e-28 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 113 / 1e-28 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 107 / 1e-26 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088632 [exp] 105 / 5e-26 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.003G196600 [exp] 105 / 9e-26 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10038799 pacid=23150572 polypeptide=Lus10038799 locus=Lus10038799.g ID=Lus10038799.BGIv1.0 annot-version=v1.0 ATGCTGCCACAGCGGATGAAGAAGGCCGTCGCAGACAATCCAAAGAAGCTTGCTAACTTAATCGATCTAGTGAATATTCCGTCGACACTCGGAGACTTGG TGGGTCAATCTCAGATTTCTCGTCTGGGATGTTTCACTCGTGTCTGGTCCTACATCAAAGCCAATAATCTCCAGGATGCCAACAATAAGAACGTGGTCAA CTGTGACGATAAGCTGAAACAAATTCTTCTCGGCAAGTCTCAGGTTGATCTAGCTGAACTTCCTGCACTCATCAAACTTCATTTTCCTAAAGCGCCAAAT AATCCCAAAAAATCTACTCACTTGCGTCTGTTCAACAAGTCCGACATCGGGAATGGTACCAACCACCATGTATTAGCCGTCGAGCTGGACACCATTACCA GCAGCGAGTTTGGGGACATTGATAATAATCATGTCGAAATTGATATCAATGGTCTGCACTCGAGGTCAGCAGCTCCAGTTGGGTACTATGATGATTCTGA TCATGGCAAGTTTGTGAATTTGACTCTTATTTTTGGTAAGCCGATTCAGGTGTGGGTTGACTACGACGGCAGAGGCAAGAGAATTAACGTCACTTTAGCT CCTGTTAATAACGCCGCCGCCAAACCAAAGGATCCATTGATTTCATTTCCCAGGACCTGTCAGATGTTTTGGCGGATAAGATGTTCATCGGTTTCTCGTC GTCTACAGGATCGTTCCTGA
AA sequence Show only first row Show all	>Lus10038799 pacid=23150572 polypeptide=Lus10038799 locus=Lus10038799.g ID=Lus10038799.BGIv1.0 annot-version=v1.0 MLPQRMKKAVADNPKKLANLIDLVNIPSTLGDLVGQSQISRLGCFTRVWSYIKANNLQDANNKNVVNCDDKLKQILLGKSQVDLAELPALIKLHFPKAPN NPKKSTHLRLFNKSDIGNGTNHHVLAVELDTITSSEFGDIDNNHVEIDINGLHSRSAAPVGYYDDSDHGKFVNLTLIFGKPIQVWVDYDGRGKRINVTLA PVNNAAAKPKDPLISFPRTCQMFWRIRCSSVSRRLQDRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26810			SWIB/MDM2 domain superfamily p...		Lus10038799 [exp]	0	1
AT1G07210			Ribosomal protein S18 (.1)		Lus10038756 [exp]	1.4	0.8578
AT1G07920			GTP binding Elongation factor ...		Lus10026488 [exp]	1.7	0.8799
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	7.7	0.8149
AT5G42060			DEK, chromatin associated prot...		Lus10032409 [exp]	8.9	0.8534
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	12.4	0.8059
AT3G16780			Ribosomal protein L19e family ...		Lus10037707 [exp]	21.4	0.8539
					Lus10038397 [exp]	21.6	0.8119
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10038750 [exp]	23.6	0.8446
					Lus10030881 [exp]	28.5	0.7964
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	29.1	0.8402

Compare expression of checked genes

Lus10038799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.