Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35760 189 / 7e-61 Uncharacterised protein family (UPF0497) (.1) AT4G16442 161 / 2e-50 Uncharacterised protein family (UPF0497) (.1) AT4G25830 64 / 9e-13 Uncharacterised protein family (UPF0497) (.1) AT3G14380 44 / 2e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039060 [exp] 308 / 9e-108 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10019999 [exp] 67 / 1e-13 AT4G25830 154 / 2e-47 Uncharacterised protein family (UPF0497) (.1) Lus10015528 [exp] 62 / 2e-11 AT4G25830 108 / 2e-29 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016900 [exp] 225 / 3e-75 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 220 / 2e-73 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.018G094500 [exp] 73 / 3e-16 AT4G25830 128 / 9e-38 Uncharacterised protein family (UPF0497) (.1) Potri.010G208300 [exp] 49 / 3e-07 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 48 / 1e-06 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10038800 pacid=23150478 polypeptide=Lus10038800 locus=Lus10038800.g ID=Lus10038800.BGIv1.0 annot-version=v1.0 ATGAGTTATTTGGGAGTTGGGGTTAGTCCTGGTAATGTTCCAGTCTACCATGGGAAAAGCCTCAAGGTGATTGATAGGAGAGTGAGGGTTTCGGAGCTGG TCCTGAGGTGCTTGACTTGTGTTCTTGGTCTGGTGTGTATTGTTCTTGTTGTTACTGATACTCAAGTTAAGGAGTTCTTCTCCATTCAGAAGAGAGCTAG CTACACTGATGTCAAAGCCATGGTATTTCTTGTGATAGCTTTTGGGATAGCTGCAGCATATTCGTTTGTGCATGTAGTGAGGTGTGTTGTGAGTATGGTT AGAGGGGATGTTCTGTTCAACAAGCCCTTGGCTTGGATCATCTTCTCTGGAGACCAGGCAATGGCGTACCTGACAGTGGCAGCATTGGCTGCTACAGTCC AGTCATCGGTGTTTGCGGAAACAGGGCAGGCAGAGCTGCAATGGATGAAGACATGCGATATGTATGCAAAGTTCTGCACGAGAGCTGGAGAAGGTGTGGC AGGTGCAGTCCTAGCCTGCCTTAGCATGGTCCTGGTTTCATGCATATCGGCTTTCAGTCTCTTCAGGCTGTACAACAGCAGCAACAAGGGTAGTAAGAGT GAGGATAGGTGGTAG
AA sequence Show only first row Show all	>Lus10038800 pacid=23150478 polypeptide=Lus10038800 locus=Lus10038800.g ID=Lus10038800.BGIv1.0 annot-version=v1.0 MSYLGVGVSPGNVPVYHGKSLKVIDRRVRVSELVLRCLTCVLGLVCIVLVVTDTQVKEFFSIQKRASYTDVKAMVFLVIAFGIAAAYSFVHVVRCVVSMV RGDVLFNKPLAWIIFSGDQAMAYLTVAALAATVQSSVFAETGQAELQWMKTCDMYAKFCTRAGEGVAGAVLACLSMVLVSCISAFSLFRLYNSSNKGSKS EDRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35760			Uncharacterised protein family...		Lus10038800 [exp]	0	1
AT1G55260			Bifunctional inhibitor/lipid-t...		Lus10042449 [exp]	4.5	0.8048
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021303 [exp]	5.6	0.8091
AT2G35760			Uncharacterised protein family...		Lus10039060 [exp]	5.7	0.7973
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	8.9	0.7764
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	12.4	0.7981
AT4G08910			unknown protein		Lus10025524 [exp]	12.6	0.7828
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	12.7	0.7905
AT3G18050			unknown protein		Lus10027253 [exp]	13.1	0.7821
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	13.6	0.7935
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	15.9	0.7702

Compare expression of checked genes

Lus10038800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.