Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 69 / 1e-13 B3 Domain of unknown function (DUF313) (.1) AT3G24850 69 / 3e-13 B3 Domain of unknown function (DUF313) (.1) AT5G24050 66 / 2e-12 B3 Domain of unknown function (DUF313) (.1) AT2G32645 64 / 3e-12 Domain of unknown function (DUF313) (.1) AT2G31420 63 / 6e-12 B3 Domain of unknown function (DUF313) (.1) AT1G05930 63 / 2e-11 B3 Domain of unknown function (DUF313) (.1) AT1G05920 57 / 2e-09 B3 Domain of unknown function (DUF313) (.1) AT3G49610 56 / 5e-09 B3 Domain of unknown function (DUF313) (.1) AT1G32030 50 / 8e-07 B3 Domain of unknown function (DUF313) (.1) AT5G38490 49 / 2e-06 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039058 [exp] 159 / 2e-49 AT2G31420 40 / 1e-04 Domain of unknown function (DUF313) (.1) Lus10039059 [exp] 88 / 2e-21 AT5G35740 157 / 3e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10000815 [exp] 69 / 3e-13 AT2G27410 68 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 64 / 8e-12 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 61 / 2e-10 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 58 / 2e-09 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 54 / 4e-08 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 46 / 1e-05 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 45 / 3e-05 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014700 [exp] 79 / 1e-16 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.015G014200 [exp] 78 / 1e-16 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 66 / 3e-12 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 63 / 3e-11 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1) Potri.013G031600 [exp] 58 / 1e-09 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10038802 pacid=23150693 polypeptide=Lus10038802 locus=Lus10038802.g ID=Lus10038802.BGIv1.0 annot-version=v1.0 ATGGCGATGCTGATCACCTTGAAAGACTTGAAAAGAAAACTAGACTTCACCCAGATGAAGAACATGGACGAGCTCGATAGCCTCCTCAAACTCACTCCTA TCATCCTGACAAAGCTTCGTCAGGAAGATAGGAAAACGACGATCAATGAAGATCACCGCCAAGAACGTAACAAAATCGGAAAAGGGAAAAGAGTACGGAC TAATAGTAGTATTAACAACATCACAATCAAGAAAACGATCGGTCGAGATTACTTCGTGGGGGATCCGGAGCAGCTCGAGAGTAGGGCTACGATTCCGAAG GCATTTAGAGAATGCATAGAGCGCGAACTTCAGGGGAGGGAGATAAAGCTGATTATCCAGAAGCACTTGTTCCGCACGGATTTAGAGCGGAGCGAGGGAC GTTTCTCCATCCCTCAGAACAAGATGTGCAAAGGAGTGCTGACCAAGGAAGAGGAGGAATGGTTGGCGACAGCGCGAGGGGAGAAAAATGAGGTGCTGGG GATGGAGCTGAAGATGGTGGATCCAGAGCTCGAGGTTAGGAAGATGATTTTGAAGCATTGGGGTATGAGGAAGCCGAACGGGAGAGTGAGCTCCATGTAC TTGTTGGCGAAATACTGGAACGATGTCGTTAAGGAGCATGGGTTTAAGGAAGGGGAAGTAGTTCAGCTGTGGGGGTTTCGTATGGGAGAAGAGTTGCCTG GGAACCTAGGGCTTGCGTTGGTTCGGCTCGGGATGATAGAAACTGGCGCTTCTTCAGGTCGTGGAGCGTAG
AA sequence Show only first row Show all	>Lus10038802 pacid=23150693 polypeptide=Lus10038802 locus=Lus10038802.g ID=Lus10038802.BGIv1.0 annot-version=v1.0 MAMLITLKDLKRKLDFTQMKNMDELDSLLKLTPIILTKLRQEDRKTTINEDHRQERNKIGKGKRVRTNSSINNITIKKTIGRDYFVGDPEQLESRATIPK AFRECIERELQGREIKLIIQKHLFRTDLERSEGRFSIPQNKMCKGVLTKEEEEWLATARGEKNEVLGMELKMVDPELEVRKMILKHWGMRKPNGRVSSMY LLAKYWNDVVKEHGFKEGEVVQLWGFRMGEELPGNLGLALVRLGMIETGASSGRGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24850	B3		Domain of unknown function (DU...		Lus10038802 [exp]	0	1
					Lus10005955 [exp]	3.0	0.8616
AT3G02125			unknown protein		Lus10013196 [exp]	5.1	0.8572
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	5.7	0.8424
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10040560 [exp]	6.3	0.7654
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	10.1	0.7871
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	11.6	0.7976
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	13.3	0.7460
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	14.4	0.8186
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	14.5	0.7648
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	17.0	0.7736

Compare expression of checked genes

Lus10038802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.