Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64320 345 / 5e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G23070 280 / 6e-88 Thymidine kinase (.1) AT3G07800 271 / 4e-85 Thymidine kinase (.1) AT1G74580 206 / 8e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 197 / 7e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 175 / 5e-46 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 169 / 5e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 167 / 3e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 166 / 2e-42 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 164 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039056 [exp] 504 / 3e-167 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039055 [exp] 462 / 5e-158 AT5G23070 309 / 9e-106 Thymidine kinase (.1) Lus10012347 [exp] 288 / 2e-91 AT3G07800 303 / 4e-105 Thymidine kinase (.1) Lus10006373 [exp] 191 / 9e-51 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 188 / 9e-50 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 181 / 6e-48 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 182 / 7e-48 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 179 / 3e-47 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 173 / 1e-46 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 387 / 6e-123 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G009951 [exp] 315 / 4e-101 AT3G07800 292 / 7e-100 Thymidine kinase (.1) Potri.006G015800 [exp] 311 / 8e-100 AT5G23070 306 / 8e-105 Thymidine kinase (.1) Potri.002G222300 [exp] 295 / 1e-94 AT3G07800 316 / 2e-110 Thymidine kinase (.1) Potri.011G057900 [exp] 201 / 4e-56 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 204 / 3e-55 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 187 / 1e-49 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 181 / 6e-48 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 177 / 2e-47 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G014500 [exp] 177 / 3e-46 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0023 [flax] [poplar] P-loop_NTPase PF00265 [flax] [poplar] TK Thymidine kinase
Representative CDS sequence Show only first row Show all	>Lus10038804 pacid=23150464 polypeptide=Lus10038804 locus=Lus10038804.g ID=Lus10038804.BGIv1.0 annot-version=v1.0 ATGGCGCCGGCTACTTACGCTGCCGCCTTTTTCTCCGCAACTCCCAAATCAACCCTCATCTCCAATCCCAATCACGCAGCTCTCCCGTTGTTGCCCACTT CTTCATTTCTCAAACCCGTCATCCGTTCACCTGGGCAGGCTGGGTTTCACAATCGGAAGATTGGACCGGCAGCGTGCCGTTCTGCGTCCTATTCCGCCGG AGAAATTCATGTCATTGTGGGTCCCATGTTCGCCGGCAAGACTACAACTCTCCTTCGGCGGATTCAGTCTGAAGATGAAAATGGCAGGCAAAATGCGGTT GTTCTCTGTTTCGATTACTTGGACTCAGTTACCACTGGTGGATTCAGAAGTGTAGCTGTTGTAAAATCAGACAAGGATACAAGATATGGACTGGACTCTA TTGTTACACACGACGGTCTGAAATTGCCTTGTTGGTCATTGCCCAAGCTGTCGTTGTTCAGACAAAGTCTTGGCGTTGATGCTTACAATCAGCTGGACGT AATTGGAATCGACGAAGCTCAATTCTTTGACGACTTGTATGATTTTTGCCGTGAAGCTGCTGATCAGGATGGGAAGACTGTGATAGTAGCTGGTTTAGAC GGTGATTACATGAGGAGGAGTTTCGGGGCTGTTTTGGATGTAATCCCTCTTGCGGATTCTGTCACGAAGTTAAATGCTCGCTGCGAGCTCTGTGGGAAGA GAGCGTTCTTCACCTTGCGAAAGACGGATGAAACTAAGGTGGAACTGATCGCAGGGGCTGATGTTTACATGCCGGTGTGCCGGAAGCATTTTGTCAGTGG ACAAGCAGTTGTTGAAGCTACAAAAGCTGTCGTAGAAGAATCTCAGAAGGTGCAAATTTTCTGCAGTACAGTTCAGCGCTTTTTGTGTATCTTCAATTGC AGAGTAATGTTAAGAAGAAGATCAGTCCTTGTTTCATATGGCGGCATTCACTTGAAATTCTTCGAAAGAGTCAGTTCCTCCCCTGTTTTCTTTCGCTGTT TCTCTAATTCTAACTTGGAAATTAAGGAGGAGACTGAATGGGAAAGACTTCTTAAACCATTCAACCTCAAAGAGCTTCGGAGATGTATAAGCAATAGAAT CACTCCACTGCAACTCTGCAAGCTGCTTCGTTTGCCTCTTGATGTTTCGGTTTCGATGCAGCTATTCCAACGGGTGGGTGCGCAGAAGGGATACGCACAC ACAATTGATGTGTACTACGCTTTGATTGATAAGCTTGGTGCTGCTGGAGACTTCAAATCTGTGGATAGGCTATTAGCGCAAATGAAGGGGGAAAGGATGG CTTTCAATGAGTCTTTATTCATTATGATTATGAAACACTATGGGAGAGCTGGTTTTCCGGGGCAAGCCACCAGGTTGTTGCTGGATATGAAGGATATTTA TTCTTGTGCGGTGACATTCAAGTCTTACAATGTTGTACTCGAGGTACTTGTAGCTGGAAATTGCCCTATCGTTGCATCGAATGTGTTCTACGATATGTTG AGTCGAGGTATCCCGCCCAATGTCTACACTTTTGGCGTGGTGATGAAGGCACTTTGTTTGGTTAATGAAGTGGACAATGCTTGTTCTTTGCTTAGAGACA TGACCAAGCACGGATATACAGTTACTTACAATACATTAATTCAAGCTTTTCTTAGGCAAGGTGCTCTTCAGGAAGCCTTCAAGCTTTTGAACGACATGGT ATTCAGAGGATGTCCCTTGGATGAAAGAACTTATAACGGTCTGATCGGAGCCCTTTGCAGAGTCGGGGCGGTGGAGAAAGGGTTAGGGTTGTTTGAGGAA ATGACGAGGAAGGATTTGGTTCCGAGCAATGTATCGGTCAACATATTGATCAATGGCCTCTGCGTAGCGGGAAAAATAAACAATGCCATGGAGCTTCTGA GGGACATGATTCATCGAGGTATGGAACCGGACATAGTGACTTATAACAGCCTGATTAATGGTTTCTGCAAGATAGGTCACATCAAGGAGGCTTTGAATAT CTTTCAGAGAGTGAAGGGTGAAGGCATACAGCCTGATGTGGTGACTTATAATACTCTGATTAGCGGGCACTGCAGAAAGGGGCTGATTAATGATGCTTGT TTGCTTCTAGGTAGATGTGTTGAAAATAGGTTTGTACCTGATCATGTAACGTGGAACATCCTAGTTCCTAAGGTTGTTAAGGATGGTGGCAAGGTCCCTA CAAGTACAAAGTTCTTGACTTTTATCTCTGATCACGTTGTACACCTCTCCCAGGATCCTTCATGGTTGCTGATACGAAAACAATCTATCGACAGCAGCCA AGGAAGTCAAGCATTTTGGCCAGACGATTATGAGGTCCAAAACAAAAGTTCTTGCACTTTCAAACTGTCTTCTGTTAGCAAAAAGCTTTTCTTCAATCAG GTTCATTTCGCTGGGAGGAAACAATTACAGTGTATAATATGGGATGGCCTTTCTGTGTTGAGCAATTATGGGGGGTTGTGA
AA sequence Show only first row Show all	>Lus10038804 pacid=23150464 polypeptide=Lus10038804 locus=Lus10038804.g ID=Lus10038804.BGIv1.0 annot-version=v1.0 MAPATYAAAFFSATPKSTLISNPNHAALPLLPTSSFLKPVIRSPGQAGFHNRKIGPAACRSASYSAGEIHVIVGPMFAGKTTTLLRRIQSEDENGRQNAV VLCFDYLDSVTTGGFRSVAVVKSDKDTRYGLDSIVTHDGLKLPCWSLPKLSLFRQSLGVDAYNQLDVIGIDEAQFFDDLYDFCREAADQDGKTVIVAGLD GDYMRRSFGAVLDVIPLADSVTKLNARCELCGKRAFFTLRKTDETKVELIAGADVYMPVCRKHFVSGQAVVEATKAVVEESQKVQIFCSTVQRFLCIFNC RVMLRRRSVLVSYGGIHLKFFERVSSSPVFFRCFSNSNLEIKEETEWERLLKPFNLKELRRCISNRITPLQLCKLLRLPLDVSVSMQLFQRVGAQKGYAH TIDVYYALIDKLGAAGDFKSVDRLLAQMKGERMAFNESLFIMIMKHYGRAGFPGQATRLLLDMKDIYSCAVTFKSYNVVLEVLVAGNCPIVASNVFYDML SRGIPPNVYTFGVVMKALCLVNEVDNACSLLRDMTKHGYTVTYNTLIQAFLRQGALQEAFKLLNDMVFRGCPLDERTYNGLIGALCRVGAVEKGLGLFEE MTRKDLVPSNVSVNILINGLCVAGKINNAMELLRDMIHRGMEPDIVTYNSLINGFCKIGHIKEALNIFQRVKGEGIQPDVVTYNTLISGHCRKGLINDAC LLLGRCVENRFVPDHVTWNILVPKVVKDGGKVPTSTKFLTFISDHVVHLSQDPSWLLIRKQSIDSSQGSQAFWPDDYEVQNKSSCTFKLSSVSKKLFFNQ VHFAGRKQLQCIIWDGLSVLSNYGGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	0	1
AT5G55220			trigger factor type chaperone ...		Lus10000783 [exp]	2.0	0.8719
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10002522 [exp]	2.4	0.8642
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	3.5	0.8927
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	9.8	0.8596
AT1G32730			unknown protein		Lus10001085 [exp]	14.4	0.8016
AT5G57120			unknown protein		Lus10001434 [exp]	14.7	0.8104
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	15.6	0.8304
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	19.4	0.8169
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	20.0	0.8353
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	20.1	0.7993

Compare expression of checked genes

Lus10038804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.